Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0198 ATGGCTTCTTCAAAGATAATCACTCTCAGAAGCTCAGAAGGTGAGGACTTCGGCCTCGATGTGGTGGCGGCGATGGAGTTGCTGGTGATCAAGCCCATGATCGAGGAGTTGCAGGTGATCAAGCCCATGATCGACAATGCGATTCCGTTGCCGAACGTCACCAGCAAGATCCTTGCAAAGGTGATCGAGTACTGCAAGAAGCACGTTGAAACTCCTAAGGCGGAGGAACACGCCGTCAATGATGAACTCAAGGCTTGGGATGCTGATTTCGTCAAAGTCGATCAGGCCACCCTCTTTGACCTCATCTTGGCAGCAGATTATCTAGATATCAAGAGCCTGTCGGATTTGACCTGCCAAACTGTTGCTGACATGATGAAGGGAAAGACTGCGGAGGAAATTCGCAAGACACTCAACATCAAGAATGACCTCACTCCAGAGGAAGAGGAGGAGATCCGGAGAGAGAACCGATGGATATTTGATTAA 483 0.4948 MASSKIITLRSSEGEDFGLDVVAAMELLVIKPMIEELQVIKPMIDNAIPLPNVTSKILAKVIEYCKKHVETPKAEEHAVNDELKAWDADFVKVDQATLFDLILAADYLDIKSLSDLTCQTVADMMKGKTAEEIRKTLNIKNDLTPEEEEEIRRENRWIFD* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0198 160 CDD BTB_POZ_SKP1 6 125 - -
Vvi3g0198 160 SUPERFAMILY Skp1 dimerisation domain-like 83 157 IPR036296 GO:0006511
Vvi3g0198 160 Pfam Skp1 family, tetramerisation domain 5 69 IPR016073 GO:0006511
Vvi3g0198 160 SUPERFAMILY POZ domain 6 71 IPR011333 -
Vvi3g0198 160 PIRSF SCF_Skp 1 160 IPR016897 GO:0006511
Vvi3g0198 160 Gene3D Potassium Channel Kv1.1; Chain A 1 160 IPR011333 -
Vvi3g0198 160 Pfam Skp1 family, dimerisation domain 111 158 IPR016072 GO:0006511
Vvi3g0198 160 PANTHER SKP1 3 157 IPR016897 GO:0006511
Vvi3g0198 160 FunFam Uncharacterized protein 5 159 - -
Vvi3g0198 160 SMART skp1_3 4 110 IPR001232 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0198 Vvi-Chr3 1740965 1742446 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0198 K03094 - vvi:100257179 221.861