Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0197 ATGGCTTCTTCAAAGACAATCATTCTCAGAAGCTCAGAAGGTGAGGACTTCGGCCTCCATGTGGTGGCGGCGATGGAGTTGCTGGTGATCAAGCCCATCATCGAGGAGGGAAACACCAAACGTGCGATTCCTTTGCCGAACGTCACCAGCAAGATCCTTGCAAAGGTGATCGAGTACTGCAAGAAGCACGTTGAAACTCCTAAGGCGGAGGAACACGCCGTCAATGATGAACTCAAGGGCTGGGCTGCTGATTTCTTCAAAGACGATCGGGCCACCTTCTTTGACCTCATCAAGGCAGCAGACTATCTACATATCAAGTGCCTGTTGGATTTGGCCTGCCAAACAGTTGTTGACATGACCAAGGAAATGTCTCCGGCCGAAATTTGCGAGATATACGTCTCGATCAAGGAAAAGTCTCTTGAAAAAATTTTCGAGAGATACAACATCAAGACTGGACTCACTCTCAAAAGCTCAGACAGCGAGACCTTCGACCTCGATGTGGCGGTGGCGACGGAGTCGCGGAAGATCAAGCGCAAGATCAAGCGCATGATCAAGGACAGACGCGCCAACAATGCGATTCTGGATCTGAACGTCACCAGCAAGATCCTTGCAACGGTGATCGAGTACTGCAAGAAGCACGCCGTCAATGATAAACTCGAGGATTTCGTCAAAGTCGATCGGACCACCCTCTTAGACCTCATCAAGGCAGCAAACTATCTAGGTATCAAGAGCCTATTGGATTTGACCTGCCAAACAGTTGCTGACATGATCAAGGAAATGTCTGGGAACGAAAATTGCGAGATTCACTTATTGATCAAGGAAAGGTCTCTTGAAAAAATTTGCAAGATATACAACATCAAGACTAAACTCACTCTCCAAAGCTCTGACGGCATGTTCTTCTACGTCGATGTGGCGGTGGCGATGGAGTCACAGACGATCAAGCACATGATCGAGGACAGATGCGCCGACAATGCGATTCCGTTGCCGAACGTCACCAGCAAGATCCTTGCAAGGGTGATCGAGTACTGCAAGAAGCACGTTGAAACTCCTAAGGCGGAGGAACACGCCGTCAATGATGAACTCAGGGCTTGGGATGCTGATTTCGTCAAAGTCGATCAGGCCACCCTCTTTGACCTCATCTTGGCAGCAAACTATCTAGATATCAAGAGCCTGTTGGATTTGACCTGCCAAACAGTTGCTGACATGATCAAGGGAAAGACTCCGTCGGAAATTCGCAAGACATTCATCTACAAGAATGACTTCACTCCGGAGGAAGAGGAGGAGGTTCGGAGAGAGAACCAATGGGCATTTGAGTAA 1317 0.4867 MASSKTIILRSSEGEDFGLHVVAAMELLVIKPIIEEGNTKRAIPLPNVTSKILAKVIEYCKKHVETPKAEEHAVNDELKGWAADFFKDDRATFFDLIKAADYLHIKCLLDLACQTVVDMTKEMSPAEICEIYVSIKEKSLEKIFERYNIKTGLTLKSSDSETFDLDVAVATESRKIKRKIKRMIKDRRANNAILDLNVTSKILATVIEYCKKHAVNDKLEDFVKVDRTTLLDLIKAANYLGIKSLLDLTCQTVADMIKEMSGNENCEIHLLIKERSLEKICKIYNIKTKLTLQSSDGMFFYVDVAVAMESQTIKHMIEDRCADNAIPLPNVTSKILARVIEYCKKHVETPKAEEHAVNDELRAWDADFVKVDQATLFDLILAANYLDIKSLLDLTCQTVADMIKGKTPSEIRKTFIYKNDFTPEEEEEVRRENQWAFE* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0197 438 Pfam Skp1 family, dimerisation domain 389 436 IPR016072 GO:0006511
Vvi3g0197 438 Pfam Skp1 family, dimerisation domain 243 291 IPR016072 GO:0006511
Vvi3g0197 438 Pfam Skp1 family, dimerisation domain 107 132 IPR016072 GO:0006511
Vvi3g0197 438 SUPERFAMILY POZ domain 290 349 IPR011333 -
Vvi3g0197 438 CDD BTB_POZ_SKP1 6 119 - -
Vvi3g0197 438 Pfam Skp1 family, tetramerisation domain 6 64 IPR016073 GO:0006511
Vvi3g0197 438 Pfam Skp1 family, tetramerisation domain 289 347 IPR016073 GO:0006511
Vvi3g0197 438 Pfam Skp1 family, tetramerisation domain 153 214 IPR016073 GO:0006511
Vvi3g0197 438 SUPERFAMILY Skp1 dimerisation domain-like 361 436 IPR036296 GO:0006511
Vvi3g0197 438 PANTHER SKP1 288 435 IPR016897 GO:0006511
Vvi3g0197 438 Gene3D Potassium Channel Kv1.1; Chain A 152 287 IPR011333 -
Vvi3g0197 438 Gene3D Potassium Channel Kv1.1; Chain A 2 151 IPR011333 -
Vvi3g0197 438 SUPERFAMILY POZ domain 5 66 IPR011333 -
Vvi3g0197 438 FunFam Uncharacterized protein 289 438 - -
Vvi3g0197 438 SUPERFAMILY POZ domain 153 216 IPR011333 -
Vvi3g0197 438 SUPERFAMILY Skp1 dimerisation domain-like 75 132 IPR036296 GO:0006511
Vvi3g0197 438 CDD BTB_POZ_SKP1 289 403 - -
Vvi3g0197 438 FunFam Uncharacterized protein 5 150 - -
Vvi3g0197 438 SUPERFAMILY Skp1 dimerisation domain-like 220 264 IPR036296 GO:0006511
Vvi3g0197 438 FunFam Protein CBG09126 151 288 - -
Vvi3g0197 438 Gene3D Potassium Channel Kv1.1; Chain A 288 438 IPR011333 -
Vvi3g0197 438 SMART skp1_3 287 388 IPR001232 GO:0006511
Vvi3g0197 438 SMART skp1_3 150 242 IPR001232 GO:0006511
Vvi3g0197 438 SMART skp1_3 4 105 IPR001232 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0197 Vvi-Chr3 1727221 1732864 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0197 K03094 - vvi:100257179 846.654