Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0194 ATGGCCATTCAGGCGCAGTTGTATTCAGAAAATCTTGGGTTTTCTCTGGGCGGCTCACAGGAATGGGTTGATAATGGTTGCGTTGGGTTTAATGGCTCTTGCTTCAATCTTCAGCAGCATCAACAGCAGTACATGCAACAGTTGCAGAGCCAGCAGGAGCAGATTCAGAGCCAGAGAAATTATCAGAACTTCTTCCTTGACAACAGTTTGATGGGTTCGACATTGAAGAACAGCCCAAATTATGGATCTTCTCATAGCTTAGCCTCCCAGTTTGACAATCAGAGACAGGAGATTGATCAGTTCATCACGCTGCAGAGTGAGAGATTGAGATTGGTTTTACAAGAGCAGAGGAAGCAGCAACTGGCTGCTCTGATGCGGAAAGTGGAATCAAAGGCATTGGCTCTCTTGAGGCAGAAGGATGAGGAGATAGCGAAAGCTACCAATAGAGCAATGGAGCTTGAAGATTTCCTGAGAAAATTGGAGATGGAGAACCAGGCCTGGCAGAGGGTGGCCAAGGAGAACGAAGCCAAAGTGATGTCTCTGAACCACACAATCGAACAGATCAAAGAAAAGGCTTGTGGGATCTTTTCCGAAGACGCAGAGTCTTGCTGCGACGACAACATGGGAAACAGGGAAGAAGGAACAGGGGAAAACAGAAGAGGAGGAGGAGGAGAGGGAGAAGAACATGAAGAAGACAGTACATCAAACATGGTTTGCAGAGGTTGTAATTCTCGAAATTCGTGCGTCCTGTTGCTTCCCTGTCGGCACTTCTGTTCATGCAAAGCTTGTGAAGGCTTTTTCGATCATTGCCCAGTTTGTCAAACGGAAAAGAAAGGGTGGATTGAGGCCAGAATTTTCTAG 861 0.4669 MAIQAQLYSENLGFSLGGSQEWVDNGCVGFNGSCFNLQQHQQQYMQQLQSQQEQIQSQRNYQNFFLDNSLMGSTLKNSPNYGSSHSLASQFDNQRQEIDQFITLQSERLRLVLQEQRKQQLAALMRKVESKALALLRQKDEEIAKATNRAMELEDFLRKLEMENQAWQRVAKENEAKVMSLNHTIEQIKEKACGIFSEDAESCCDDNMGNREEGTGENRRGGGGEGEEHEEDSTSNMVCRGCNSRNSCVLLLPCRHFCSCKACEGFFDHCPVCQTEKKGWIEARIF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0194 286 Coils Coil 111 131 - -
Vvi3g0194 286 Coils Coil 136 191 - -
Vvi3g0194 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 285 IPR013083 -
Vvi3g0194 286 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 56 282 IPR017066 -
Vvi3g0194 286 PIRSF SBP1_RNase_bind 27 286 IPR017066 -
Vvi3g0194 286 Pfam Zinc finger, C3HC4 type (RING finger) 237 277 - -
Vvi3g0194 286 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 223 285 - -
Vvi3g0194 286 MobiDBLite consensus disorder prediction 207 235 - -
Vvi3g0194 286 MobiDBLite consensus disorder prediction 207 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0194 Vvi-Chr3 1707590 1708550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0194 238 286 Miscellaneous Gene Families AT2G21380 40.816 4.23e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0194 K19042 - vvi:100262284 510.76