Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0192 ATGGGAGAAGAAGAAATGAGTGTTGAGCAGGTGGAGGAGGAGTTCACAGTGTGGAAGAAGAACACTCCATTTCTCTACGATCTCATCATCTCTCACCCCCTCGAATGGCCTTCTCTCACTGTTCAATTCCTCCCATCTCCTCCGCTCCCCTACGCCCTCGACTCATTCTCCGTTCACAAACTTGTCCTCGGGACCCACACCTCCGACGGCTTCCCCAACTACCTCATGGTCGCCGACGCATTCCTCCCCAGAAACACCGCCGCCCCATCTGAGCAAAACCCCACGATTCCTAAGGTGGAGATAACGAAGAAAATACATGTGGATGGAGAAGTAAATCGAGCTCGGTGTATGCCACAAAACCCAGATATGGTTGCTGCTAAGACAAGTGGTTTGGAAGTGTACGTTTTTAACTGTCAAAAGCCGCCGGTGGGGGGCGAAGGACGGTCTTGCAATCCTGATTTGAGGTTAAGGGGTCATGAGAAAGAAGGGTATGGGTTGTCTTGGAGTTCCTTTAAAGGGGGTTATGTTTTGAGTGGTTCAAATGATTGCAAGGTATGCTTATGGGATGTGTCTGCATCTGCTGAAGATAAAGTGCTAGGCGCAATGCATGTTTACGAGGCTCATGAAAACGTGGTAGAAGATGTGTCCTGGCATTTGAAGAATGAAAATCTATTTGGATCAGTGGGGGATGATTGTCGATTAATGATTTGGGACTTGCGTTTGGACAAACCTCAGCATTCTGTTATAGTTCATGAGAAAGAGGTGAATTTTCTTTCTTTCAATCCATATAATGAATGGATTCTGGCTACAGCATCTTCAGACACTACTGTTGGGCTGTTCGATATGCGGAAGCTGAACTCACCATTGCATGTTTTAAGCAGCCACACGGAGGAGGTATTCCAGGTAGAATGGGATCCCAATCATGAAACTGTGTTGGCTTCTTCTGCTGATGACCGGAGGTTGATGGTTTGGGATCTTAACAGGATTGGGGAGGAGCAGTTAGAAGGAGATGCTGCAGATGGTCCTCCTGAGCTTCTCTTTTCTCATGGGGGTCATAAAGCCAAGATATCAGACTTCTCCTGGAACAAAAATGAGCCATGGGTTATTTCAAGTGTAGCTGAGGACAATACTCTTCAGATCTGGAAAATGACCGAGGGTATTTATCGAGATGAGGATGGCACACAAACTGCTGATGATCATTCATAG 1206 0.4677 MGEEEMSVEQVEEEFTVWKKNTPFLYDLIISHPLEWPSLTVQFLPSPPLPYALDSFSVHKLVLGTHTSDGFPNYLMVADAFLPRNTAAPSEQNPTIPKVEITKKIHVDGEVNRARCMPQNPDMVAAKTSGLEVYVFNCQKPPVGGEGRSCNPDLRLRGHEKEGYGLSWSSFKGGYVLSGSNDCKVCLWDVSASAEDKVLGAMHVYEAHENVVEDVSWHLKNENLFGSVGDDCRLMIWDLRLDKPQHSVIVHEKEVNFLSFNPYNEWILATASSDTTVGLFDMRKLNSPLHVLSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGEEQLEGDAADGPPELLFSHGGHKAKISDFSWNKNEPWVISSVAEDNTLQIWKMTEGIYRDEDGTQTADDHS* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0192 401 PRINTS G protein beta WD-40 repeat signature 176 190 IPR020472 -
Vvi3g0192 401 PRINTS G protein beta WD-40 repeat signature 268 282 IPR020472 -
Vvi3g0192 401 PRINTS G protein beta WD-40 repeat signature 312 326 IPR020472 -
Vvi3g0192 401 PANTHER WD40 REPEAT FAMILY 3 392 - -
Vvi3g0192 401 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 13 83 IPR022052 -
Vvi3g0192 401 SMART WD40_4 285 325 IPR001680 GO:0005515
Vvi3g0192 401 SMART WD40_4 241 281 IPR001680 GO:0005515
Vvi3g0192 401 SMART WD40_4 149 189 IPR001680 GO:0005515
Vvi3g0192 401 SMART WD40_4 198 238 IPR001680 GO:0005515
Vvi3g0192 401 SMART WD40_4 342 382 IPR001680 GO:0005515
Vvi3g0192 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 327 IPR001680 GO:0005515
Vvi3g0192 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 327 - -
Vvi3g0192 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 156 198 IPR001680 GO:0005515
Vvi3g0192 401 SUPERFAMILY WD40 repeat-like 104 387 IPR036322 GO:0005515
Vvi3g0192 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 386 IPR001680 GO:0005515
Vvi3g0192 401 FunFam WD-40 repeat-containing protein MSI1 1 401 - -
Vvi3g0192 401 Pfam WD domain, G-beta repeat 287 325 IPR001680 GO:0005515
Vvi3g0192 401 Pfam WD domain, G-beta repeat 202 238 IPR001680 GO:0005515
Vvi3g0192 401 Pfam WD domain, G-beta repeat 346 382 IPR001680 GO:0005515
Vvi3g0192 401 Pfam WD domain, G-beta repeat 243 281 IPR001680 GO:0005515
Vvi3g0192 401 ProSitePatterns Trp-Asp (WD) repeats signature. 176 190 IPR019775 -
Vvi3g0192 401 Gene3D - 2 401 IPR015943 GO:0005515
Vvi3g0192 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 247 IPR001680 GO:0005515
Vvi3g0192 401 ProSitePatterns Trp-Asp (WD) repeats signature. 312 326 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0192 Vvi-Chr3 1684485 1690368 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0192 202 386 Miscellaneous Gene Families AT5G08390 20.000 9.97e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0192 K10752 - vvi:100265787 832.402