Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0188 ATGGCATCAAAGAGAATTGTGAAAGAGCTCAAGGACTTGCAGAGGGATCCCCCAACTTCATGCAGTGCAGGTCCCGTGGCTGAGGATATGTTCCATTGGCAGGCAACCATCATCGGTCCCAATGACAGTCCATATTCTGGTGGTGTTTTCCTTGTGACCATCCATTTCCCACCTGACTATCCTTTCAAACCTCCAAAGGTTGCCTTCCGGACCAAGGTTTTCCATCCAAACATTAACAGCAATGGAAACATCTGCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCTCTTGTCCCTGAGATTGCTCATTTGTGCAAGACTGATAAAGTGAAGTACGAATCAACAGCTCGCAGCTGGACCCAGAAATATGCCATGGGATAA 447 0.4698 MASKRIVKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHLCKTDKVKYESTARSWTQKYAMG* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0188 148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Vvi3g0188 148 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Vvi3g0188 148 SMART ubc_7 4 147 - -
Vvi3g0188 148 Pfam Ubiquitin-conjugating enzyme 5 141 IPR000608 -
Vvi3g0188 148 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Vvi3g0188 148 FunFam Ubiquitin-conjugating enzyme 28, E2 1 148 - -
Vvi3g0188 148 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 135 - -
Vvi3g0188 148 SUPERFAMILY UBC-like 2 147 IPR016135 -
Vvi3g0188 148 CDD UBCc 3 142 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0188 Vvi-Chr3 1661295 1662143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0188 2 114 Miscellaneous Gene Families AT3G17000 36.134 2.68e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0188 - K06689 vvi:100248604 313.538