Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0187 ATGAGTGCTTCAAGGTTCATTAAGTGCGTCACTGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTTATCTCCTACACCAGCAACACTTTCCCCACGGATTATGTGCCAACTGTATTTGACAATTTCAGTGCAAATGTTGTGGTGGATGGGAGCACTGTTAATCTAGGGTTGTGGGATACTGCAGGCCAGGAGGATTACAATAGGTTGAGACCTTTGAGCTACCGTGGTGCAGATGTCTTTCTGCTTGCTTTCTCCCTCATTAGCAAGGCTAGCTATGAAAATGTTGCCAAGAAATGGATTCCTGAGTTGAGGCATTATGCACCCGGTGTTCCAATAATTCTTGTCGGGACAAAGCTTGATCTTCGAGATGATAAGCAGTTCTTCATAGATCACCCTGGTGCAGTGCCCATTACCACAGCTCAGGGAGAGGAACTGAGAAAGCTGATTGGAGCTCCTGCTTACATTGAATGTAGTTCAAAAACACAGCAGAACGTGAAGGCTGTCTTTGATGCGGCCATTAAGGTGGTTCTCCAGCCACCAAAGCAGAAGAAGAGAAAGAAGAGAAAGGCACAGAAAGCTTGTTCTATATTGTGA 597 0.4657 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKRKKRKAQKACSIL* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0187 198 NCBIfam small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Vvi3g0187 198 PANTHER RHO FAMILY GTPASE 4 196 IPR003578 GO:0005525|GO:0007264
Vvi3g0187 198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Vvi3g0187 198 ProSiteProfiles small GTPase Rab1 family profile. 2 198 - -
Vvi3g0187 198 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Vvi3g0187 198 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Vvi3g0187 198 SMART rab_sub_5 7 180 - -
Vvi3g0187 198 ProSiteProfiles small GTPase Ras family profile. 2 198 IPR001806 GO:0003924|GO:0005525
Vvi3g0187 198 Gene3D - 5 192 IPR027417 -
Vvi3g0187 198 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Vvi3g0187 198 FunFam rac-like GTP-binding protein RAC2 5 195 - -
Vvi3g0187 198 SMART ras_sub_4 4 180 - -
Vvi3g0187 198 CDD Rop_like 6 178 - -
Vvi3g0187 198 PRINTS Transforming protein P21 ras signature 30 46 - -
Vvi3g0187 198 PRINTS Transforming protein P21 ras signature 47 69 - -
Vvi3g0187 198 PRINTS Transforming protein P21 ras signature 7 28 - -
Vvi3g0187 198 PRINTS Transforming protein P21 ras signature 155 177 - -
Vvi3g0187 198 PRINTS Transforming protein P21 ras signature 109 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0187 Vvi-Chr3 1656165 1659987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0187 7 180 EF-hand Containing Proteins AT5G27540 25.862 2.24e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0187 K04392 - vvi:100253703 372.089