Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0185 ATGGTGGTATCAGGACAGGCGCTGATAGCCGCGGTTCTTTCTTTGTTGGTCTCGTATGCGGCCGCGCATGGCATCGCTAAAGGGGCGAAGACTGTAACATATGATGGAAGGTCTCTGATCGTCAATGGAAGACGGGAGCTTCTCTTTTCAGGCTCGATACATTACCCCCGGAGCACCCCAGAGATGTGGCCGGACATTCTTCAAAAGGCGAAACATGGAGGCTTGAATTTGATCCAGACTTACGTGTTCTGGAATATCCATGAGCCGGTTGAGGGCCAGTTCAACTTTGAAGGCAACTATGACTTAGTGAAGTTCATCAAATTGATAGGCGATTATGGTTTGTATGCAACCCTCAGGATCGGGCCATTCATCGAGGCTGAATGGAACCACGGAGGATTTCCATATTGGTTAAGAGAAGTCCCCGACATCATATTCCGGTCCTACAATGAGCCATTCAAGTATCACATGGAAAAATACAGCAGGATGATAATAGAAATGATGAAAGAAGCAAAACTGTTTGCTCCTCAAGGAGGCCCCATCATACTAGCTCAGATCGAAAATGAGTACAATAGTATTCAACTTGCATATAGGGAGCTAGGGGTCCAGTATGTGCAGTGGGCAGGCAAAATGGCTGTGGGACTCGGAGCTGGAGTCCCCTGGATTATGTGCAAACAGAAGGATGCCCCTGATCCTGTGATCAATACATGCAACGGGAGGCACTGCGGGGATACATTCACTGGCCCCAATAGACCAAACAAGCCTTCTCTATGGACTGAGAACTGGACAGCTCAGTATAGAGTATTTGGAGACCCACCATCCCAAAGAGCAGCAGAAGATCTTGCTTTCTCGGTTGCTCGATTCATCTCAAAGAATGGAACACTTGCCAACTATTACATGTACCATGGTGGGACAAATTTTGGGAGAACAGGCTCATCCTTTGTGACTACACGCTACTATGATGAAGCCCCTCTTGATGAATACGGCCTGCAGAGGGAACCCAAATGGGGTCACCTCAAAGACTTGCATTCTGCTTTGAGATTGTGCAAAAAGGCCCTGTTTACGGGGAGCCCCGGGGTTGAAAAGTTGGGAAAGGATAAAGAGGTAAGGTTCTATGAGAAGCCTGGAACCCACATTTGTGCTGCTTTCCTGACCAACAACCATTCGAGAGAAGCGGCAACTCTTACTTTCAGGGGAGAGGAATATTTCCTGCCCCCACATTCCATCAGCATCCTTCCTGATTGCAAGACTGTTGTTTACAATACTCAGAGGGTTGTAGCACAACATAATGCGAGAAACTTCGTTAAATCGAAGATAGCAAACAAGAATCTCAAATGGGAAATGTCACAAGAACCGATTCCAGTCATGACAGACATGAAAATTCTCACCAAGTCACCAATGGAGCTTTACAACTTCCTTAAAGATAGATCAGACTACGCCTGGTTCGTTACCAGCATAGAACTTAGTAATTATGACCTACCAATGAAGAAAGACATCATCCCAGTCCTACAGATCTCGAATCTTGGCCATGCGATGCTCGCATTCGTCAATGGCAATTTCATTGGGTCTGCCCATGGGAGCAATGTAGAGAAAAACTTTGTTTTCAGGAAACCAGTGAAGTTCAAGGCCGGAACAAACTACATTGCCCTGCTGTGTATGACAGTGGGACTACCGAATAGCGGAGCCTACATGGAGCATAGGTATGCAGGGATCCATAGTGTGCAGATCCTCGGGTTGAATACTGGAACTCTTGATATCACAAATAATGGTTGGGGACAACAGGTGGGTGTGAATGGAGAACACGTCAAGGCCTACACTCAGGGAGGATCACACAGAGTGCAGTGGACTGCAGCCAAGGGGAAGGGACCCGCTATGACATGGTACAAGACCTACTTTGACATGCCTGAAGGAAATGACCCAGTGATTCTCCGGATGACTAGTATGGCTAAAGGAATGGCTTGGGTGAATGGGAAAAACATAGGTCGTTACTGGTTGTCTTACCTATCACCTCTTGAAAAGCCAAGTCAGTCTGAATACCATGTTCCAAGAGCCTGGCTAAAGCCCTCAGACAATCTCCTGGTCATTTTCGAGGAAACTGGAGGAAACCCAGAGGAGATAGAGGTTGAGCTAGTGAATAGAGACACAATCTGCAGCATCGTAACCGAGTATCACCCACCCCATGTCAAGTCATGGCAAAGGCACGACAGCAAGATCCGGGCGGTGGTAGACGAAGTGAAACCCAAGGGCCACCTTAAATGCCCCAACTACAAAGTGATCGTGAAGGTGGATTTTGCCAGCTTCGGCAATCCATTGGGCGCCTGTGGAGACTTCGAAATGGGCAACTGCACTGCCCCCAACAGCAAGAAAGTTGTCGAGCAGCACTGTATGGGGAAGACCACTTGTGAAATACCGATGGAGGCGGGGATTTTTGATGGGAACAGTGGAGCTTGCTCCGATATCACAAAGACACTGGCTGTGCAGGTGAGATGTGGGCGGAAAGTGTAG 2502 0.4784 MVVSGQALIAAVLSLLVSYAAAHGIAKGAKTVTYDGRSLIVNGRRELLFSGSIHYPRSTPEMWPDILQKAKHGGLNLIQTYVFWNIHEPVEGQFNFEGNYDLVKFIKLIGDYGLYATLRIGPFIEAEWNHGGFPYWLREVPDIIFRSYNEPFKYHMEKYSRMIIEMMKEAKLFAPQGGPIILAQIENEYNSIQLAYRELGVQYVQWAGKMAVGLGAGVPWIMCKQKDAPDPVINTCNGRHCGDTFTGPNRPNKPSLWTENWTAQYRVFGDPPSQRAAEDLAFSVARFISKNGTLANYYMYHGGTNFGRTGSSFVTTRYYDEAPLDEYGLQREPKWGHLKDLHSALRLCKKALFTGSPGVEKLGKDKEVRFYEKPGTHICAAFLTNNHSREAATLTFRGEEYFLPPHSISILPDCKTVVYNTQRVVAQHNARNFVKSKIANKNLKWEMSQEPIPVMTDMKILTKSPMELYNFLKDRSDYAWFVTSIELSNYDLPMKKDIIPVLQISNLGHAMLAFVNGNFIGSAHGSNVEKNFVFRKPVKFKAGTNYIALLCMTVGLPNSGAYMEHRYAGIHSVQILGLNTGTLDITNNGWGQQVGVNGEHVKAYTQGGSHRVQWTAAKGKGPAMTWYKTYFDMPEGNDPVILRMTSMAKGMAWVNGKNIGRYWLSYLSPLEKPSQSEYHVPRAWLKPSDNLLVIFEETGGNPEEIEVELVNRDTICSIVTEYHPPHVKSWQRHDSKIRAVVDEVKPKGHLKCPNYKVIVKVDFASFGNPLGACGDFEMGNCTAPNSKKVVEQHCMGKTTCEIPMEAGIFDGNSGACSDITKTLAVQVRCGRKV* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0185 833 Pfam Beta-sandwich domain in beta galactosidase 353 424 IPR041392 -
Vvi3g0185 833 Coils Coil 182 202 - -
Vvi3g0185 833 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 177 189 IPR019801 GO:0004553|GO:0005975
Vvi3g0185 833 SUPERFAMILY Galactose-binding domain-like 408 571 IPR008979 -
Vvi3g0185 833 CDD Gal_Rha_Lectin_BGal 739 829 - -
Vvi3g0185 833 SUPERFAMILY Galactose-binding domain-like 588 735 IPR008979 -
Vvi3g0185 833 FunFam Beta-galactosidase 28 348 - -
Vvi3g0185 833 Pfam Beta-galactosidase jelly roll domain 612 695 IPR025300 -
Vvi3g0185 833 Pfam Glycosyl hydrolases family 35 38 344 IPR031330 -
Vvi3g0185 833 Gene3D - 738 833 IPR043159 -
Vvi3g0185 833 Pfam Galactose binding lectin domain 750 829 IPR000922 GO:0030246
Vvi3g0185 833 Gene3D Glycosidases 29 348 - -
Vvi3g0185 833 FunFam Beta-galactosidase 592 716 - -
Vvi3g0185 833 ProSiteProfiles SUEL-type lectin domain profile. 742 830 IPR000922 GO:0030246
Vvi3g0185 833 Gene3D - 587 722 - -
Vvi3g0185 833 SUPERFAMILY (Trans)glycosidases 30 349 IPR017853 -
Vvi3g0185 833 PANTHER BETA-GALACTOSIDASE RELATED 20 744 IPR001944 GO:0004553|GO:0005975
Vvi3g0185 833 FunFam Beta-galactosidase 298 426 - -
Vvi3g0185 833 PRINTS Glycosyl hydrolase family 35 signature 175 190 IPR001944 GO:0004553|GO:0005975
Vvi3g0185 833 PRINTS Glycosyl hydrolase family 35 signature 63 81 IPR001944 GO:0004553|GO:0005975
Vvi3g0185 833 PRINTS Glycosyl hydrolase family 35 signature 42 59 IPR001944 GO:0004553|GO:0005975
Vvi3g0185 833 PRINTS Glycosyl hydrolase family 35 signature 293 308 IPR001944 GO:0004553|GO:0005975
Vvi3g0185 833 PRINTS Glycosyl hydrolase family 35 signature 256 271 IPR001944 GO:0004553|GO:0005975
Vvi3g0185 833 PRINTS Glycosyl hydrolase family 35 signature 649 665 IPR001944 GO:0004553|GO:0005975
Vvi3g0185 833 PRINTS Glycosyl hydrolase family 35 signature 312 328 IPR001944 GO:0004553|GO:0005975
Vvi3g0185 833 PRINTS Glycosyl hydrolase family 35 signature 622 636 IPR001944 GO:0004553|GO:0005975
Vvi3g0185 833 PRINTS Glycosyl hydrolase family 35 signature 118 137 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0185 Vvi-Chr3 1641239 1645417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0185 32 831 Glycoside Hydrolase AT2G16730 58.904 0.0 1038
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0185 - - vvi:100258852 1723.37