Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0183 ATGGAAACTCGGAGCCGCAAGCGGGCGGAGGCGTCCTCAGCAGCCCCTTCTTCTGGACCCACCACCCGGTCGAGCAAGCGACCTCGTATCTCCTCTTCTTCTTCTTCGACGATCCCAATTTCATCGATCTCGACTCGCTCTCGCGTGTCTAGGTCTCAAGACTCATTGGCTTCGTCTACCCCCATGGACTCAACCAATGAATCCTCCGGTTCTGCTGCCCGTGGCCGCCGTGGTCGCAATCAGGGCGGTGATAAAGATAATTCCGATAAAGGAAAGGAGAAGGAGCATGAAGTTAGGGTTAGGGACAGGGACAGGGACAGGGATAGGGACAGAGAAGCGGCGGAGAGGGCATTAGGCTTGAATATAGATGGTGGGGGAGGTGGCGATGACGATGACAATGACAGCGAAGGCGGTGCAGGAATTTTGCATCAGAATTTCACCTCTGCTAGCAGTGCCCTCCAAGGGCTGCTTCGTAAACTAGGGGCTGGGTTGGATGATCTGCTGCCGTCTTCTGCGATGGGCTCCGCGTCTTCCTCTCACCAGAGCGGCCGGTTGAAGAAGATTTTGTCGGGGTTGAGGGCGGATGGTGAAGAGGGAAGGCAGGTGGAGGCCTTGACACAGCTTTGTGAGATGCTTTCCATTGGTACTGAGGAGTCACTCAGTACATTTTCAGTGGATTCCTTCGTGCCGGTGCTCGTGGGTTTGCTCAATCATGAGAGCAATCCCGATATTATGCTTCTTGCGGCCCGGGCATTGACCCATTTATGTGATGTGCTGCCTTCTTCATGTGCAGCAGTAGTGCATTATGGTGCAGTTTCATGCTTCTGTGCTAGGTTACTCACAATTGAGTATATGGACTTGGCTGAACAGTCTTTGCAAGCTCTTAAGAAGATATCTCAGGAACACCCAACTGCCTGCTTGCGAGCTGGAGCACTCATGGCAGTGCTTTCATATCTGGATTTCTTCTCCACGGGGGTCCAGCGAGTGGCCTTGTCTACAGCTGCAAATATGTGCAAGAAACTCCCTTCAGATGCAGCTGACTTTGTGATGGAAGCTGTCCCTCTGTTGACGAACCTTCTGCAGTATCATGATGCTAAGGTGTTAGAACATGCTTCTGTTTGCTTGACTCGAATTGCTGAAGCATTTGCTTCATCTCCGGATAAATTGGATGAACTATGCAATCATGGACTAGTTGACCAAGCTGCCTCTCTCATTTCCACCAGTAATTCTGGGGGTGGGCAGGCATCCCTTAGCACGCCGACGTACACGGGGTTAATCCGACTTCTTTCTACATGTGCAAGTGGGTCTCCTTTGGGAGCCAAAACTCTGCTTCTCCTAGGTATCAGTGGCATTCTTAAAGATATATTATCAGGTTCTGGCCTTGTTGCAAGCATATCTGTTTCACCTGCTATAAGTCGACCGCCTGAGCAGATTTTTGAGATCGTTAACCTTGCAAATGAGCTGCTGCCTCCACTTCCAGAAGGAATCATTTCTCTTCCAGCTAGCTCCAATCTTCTTGTTAAAGGGACTCTTGTGAAGAAGGCTCCATCTAGCAGTTCTGGGAAACAGGAAGATGTCAATGGAAATGTGCCTGAGGTTTCTGCTCGTGAGAAACTATTAAATGATCAGCCCGAGCTTCTGCAGCAATTTGGAATGGACCTTCTTCCTGTTCTAATACAGATCTATGGATCCAGTGTGAATGGCCCTGTTCGCCATAAATGTTTGTCAGTTATTGGAAAATTAATGTACTTCAGCACCGCAGATATGATCCAGTCTTTGATTAGTGTGACAAACATATCAAGTTTCTTAGCTGGTGTTTTAGCATGGAAAGATCCTCAAGTGTTGGTTCCTGCCCTCCAAATAGCTGAGATCCTGATGGAAAAACTTCCTGGGACGTTTTCCAAGATGTTTGTGAGGGAAGGTGTTGTTCATGCTATAGATACATTAATTTTGGCTGGGTCTCAAAATGCAGTTTCTGTTCAACCATCTTCCAATGAGAAGGATAATGATTCTATAACTGGAACATCACGGTCTAGGCGTTATCGAAAACGTGGTGGTAACCCAAATCCAGATGCAAATTCCTTGGAAGAACCCAAAACTTCTGTTTCTGTAACTATTGGTTCACCTCCAAGTTCGGTAGAAATTCCCACTTCTAATTCTAATCTTCGCACCACAGTAAGTGCATGTGCAAAAGCTTTCAAAGACAAGTACTTCCCTTCAGATCCTGGCTGTGCTGAAGCTGGAGTTACGGATGATCTTCTACATTTAAAGAATCTTTGCATGAGGTTGAGTTCTGGAATTGATGATCACAAGACCAAAGCAAAGGGAAAGTCTAAAGCTTCTGGGCATCGCCTTATTGACACATCTACTAATAAAGAGGAGAATTTGACTGCAGTGTTATCCGAGATGTTAGCTGAACTAAGCAAAGGGGATGGTGTATCCACCTTTGAGTTTATTGGTAGTGGAGTTGTTGCTGCTTTGCTGAACTATTTTTCTTGTGGACACTTCTCTAAGGAGAGAATTTCAGAGGCTAATCTGTCCAAGTTTCGGACCCAAGCACTTAAAAGATTTAAGTCTTTTGTTGCAATTGCCCTTCCATCCAATATTGATGGAAGGAATGCTGCTCCTATGACTGTCTTAGTTCAGAAACTTCAAAATGCTTTATCCTCCTTGGAACGTTTTCCAGTGGTGCTTAGCCATTCATCTAGATCTTCTAGCGGAAATGCACGTCTCTCTTCTGGACTAAGTGCATTGTCTCAACCATTCAAGCTGCGGCTTTGTCGAGCCCAAGGGGAAAAATCTCTCCGCGATTATTCTTCCAATGTTGTACTGATTGACCCATTAGCTAGTTTAGCAGCTGTTGAGGACTTTCTTTGGCCCCGAGTTCAACGTGGTGACACTGGGCAGAAGCCCTCAGCATCTGCAGGAAATTCAGAGTCTGGGACCACGCCAACTGGGGCTGGTGCTTCATCGCCATCTACTTCTACTCCTGCTTCCACTGCTCGTCGTCATTCCACTAGATCCAGAACATCTGTGAATATAGCTGACACAGCTAGAAAAGAACCTCCACTGGAGAAAACCCCAAGCTCATCAAAGGGCAAGGGTAAAGCAGTTCTCAAACCTGCCCAGGAGGATGCAAGAGGACCTCAAACAAGAAATGCAGCTCGTAGAAGGGCATCTCTAGATAAAGATGCACAGCTGAAACCTGTGGGAGATTCTAGTTCTGAGGATGAAGAGTTGGATATATCTCCTGTTGAGATTGATGATGCATTAGTTATTGAAGATGATGATATCTCAGATGACGAAGATGATGACCATGATGATGTGCTAAGAGATGATTCTCTACCTGTTTGCATGCCAGACAAAGTGCATGATGTGAAATTGGGTGACTCAGCTGAAGATAGTAATAATGCTCCTGCAACAAGTGATAGTCAGACCAATGCAGCTTCCGGTTCTAGTAGCAGAGCTGCTGCAGTTAAGGGTTTGGACTCCACTGAGTTTAGGAGTGGGAACTCTTTTGGTTCAAGGGGGGCAATGTCATTTGCTGCTGCTGCAATGGCAGGACTTGCATCTGCAAATGGTAGAGGTATCAGGGGAGGCAGAGATCGGCATGGACGCCCTCTATTTGGTTCTAGTGATCCTCCTAGATTAATATTTTCTGCAGGCGGGAAGCAGCTTAATAGGCACTTAACAATTTATCAGGCCATCCAACGCCAACTTGTGCTAGATGAGGACGATGATGAAAGATACAATGGCAGTGATTTTATATCTAGTGATGGTAGCAGGTTATGGAGTGATATTTATACTATCACATACCAAAGGGCAGACGCTCAAGCTGACAGAGCTTTGGTAGGAGGATCAAGTTCTGCTACCCAGTCAAGATCTACCAGAGCTGGGTCTGGTTCTAGTTCTAATACTGACATGTCACTTCATCGAATGTCGCTCCTAGATAGCATCTTGCAGGGTGAACTTCCTTGTGATTTGGAAAAATCTAATCCTACTTACAATATAATGGCATTGTTGCGGGTACTGGAGGGTTTGAACCAACTTGCGCCTCGCTTAAGAGTCCAGGCAGTATCTGATGATTTCTCTGAAGGGAAGATTTCTTGTCTAGATGAGCTTAGTGCAACTGGTGCCAGGGTTCCATATGAGGAATTTATCAATAGCAAGCTAACTCCGAAGTTGGCCCGCCAAATCCAGGATGCTCTTGCACTGTGTAGTGGTAGTCTTCCATCGTGGTGTTACCAGGTGACAAAAGCATGTCCATTCTTGTTTCCTTTTGAGACCCGGCGACAGTATTTCTACTCAACTGCTTTTGGATTGTCACGTGCTTTATATCGGCTCCAGCAGCAACAAGGTGCAGATGGTCATGGATCAACAAATGAAAGAATTGGGAGATTGCAGCGCCAAAAAGTTCGTGTCTCAAGAAACCGCATTTTAGACTCTGCTGCAAAAGTCATGGAGATGTATTCTAGCCAAAAGGCTGTTCTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGATTAGGTCCTACATTGGAGTTCTATACCCTTCTAAGTCATGACCTACAGAAGGTTGGGCTTGGCATGTGGAGGTCAAATTTTTCACCAGATAAACAATCAATGGAAATTGATGGAGATGAACTGAAAAATGGAAAAACAGATAATATCTCTAGGTTGAGTCCTGCTGCCAGCGATATTGTCCAAGCTCCCCTTGGGTTGTTCCCTCGGCCCTGGCCTCCAAATGCTGATGCTTCTGATGGTAGCCAATTCTCTAAGGTTATTGAACATTTTCGCTTGGTTGGGCGTGTGATTGCCAAAGCCCTTCAAGATGGGCGGCTCTTGGACCTGCCATTATCGACAGCACTTTACAAGCTTGTGCTTGGTCAAGAGCTTGATTTGCATGATATTCTTTCTTTTGATGCCGATTTTGGGAAGATCTTGCAAGAACTACAAGTCCTTGTTAGTCGGAAACAGTATCTAGAATCGACGGGTGGTGATAATCAGGATGCGATTGCTAATTTATGTTTCCGTGGGGCGCCAATAGAAGATCTCTGTCTGGATTTCACTCTTCCTGGTTATCCAGACTACATTTTGAAACCAGGAGAAGAAAATGTGGATATTAATAACTTGGAGGAATATATATCTTTGGTCGTTGATGCAACCGTTAAAACTGGAATTATGCGGCAAATGGAAGCATTTAGATCAGGTTTCAATCAGGTTTTTGACATCACATCTCTACAAATATTCTCTCCGGATGAATTGGATTATTTGCTATGTGGCAGAAGAGAGTTGTGGGAGGCTGAGACACTTGTTGATCACATAAAGTTCGATCATGGATACACCGCCAAGAGCCCTGCAATCATTAATTTACTTGAGATTATGGGAGAATTCAACCCAGAGCAGCAGCGGGCCTTCTGCCAGTTCGTCACTGGCGCACCTAGACTGCCGCCTGGTGGTCTGGCAGTGCTGAATCCAAAGCTGACTATTGTCAGAAAGCATTCTTCGAGCACAGTCAGCACAGCAGCCAATGGTAGTTCTGGCCCATCGGAATCAGCGGATGATGACTTGCCCAGTGTCATGACATGTGCTAATTACCTCAAGCTTCCTCCGTACTCTACCAAGGAAATCATGTACAAGAAACTTCTGTATGCGATCAGCGAGGGACAGGGGTCTTTTGATTTGTCATGA 5691 0.4593 METRSRKRAEASSAAPSSGPTTRSSKRPRISSSSSSTIPISSISTRSRVSRSQDSLASSTPMDSTNESSGSAARGRRGRNQGGDKDNSDKGKEKEHEVRVRDRDRDRDRDREAAERALGLNIDGGGGGDDDDNDSEGGAGILHQNFTSASSALQGLLRKLGAGLDDLLPSSAMGSASSSHQSGRLKKILSGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVDQAASLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGLVASISVSPAISRPPEQIFEIVNLANELLPPLPEGIISLPASSNLLVKGTLVKKAPSSSSGKQEDVNGNVPEVSAREKLLNDQPELLQQFGMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTADMIQSLISVTNISSFLAGVLAWKDPQVLVPALQIAEILMEKLPGTFSKMFVREGVVHAIDTLILAGSQNAVSVQPSSNEKDNDSITGTSRSRRYRKRGGNPNPDANSLEEPKTSVSVTIGSPPSSVEIPTSNSNLRTTVSACAKAFKDKYFPSDPGCAEAGVTDDLLHLKNLCMRLSSGIDDHKTKAKGKSKASGHRLIDTSTNKEENLTAVLSEMLAELSKGDGVSTFEFIGSGVVAALLNYFSCGHFSKERISEANLSKFRTQALKRFKSFVAIALPSNIDGRNAAPMTVLVQKLQNALSSLERFPVVLSHSSRSSSGNARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAVEDFLWPRVQRGDTGQKPSASAGNSESGTTPTGAGASSPSTSTPASTARRHSTRSRTSVNIADTARKEPPLEKTPSSSKGKGKAVLKPAQEDARGPQTRNAARRRASLDKDAQLKPVGDSSSEDEELDISPVEIDDALVIEDDDISDDEDDDHDDVLRDDSLPVCMPDKVHDVKLGDSAEDSNNAPATSDSQTNAASGSSSRAAAVKGLDSTEFRSGNSFGSRGAMSFAAAAMAGLASANGRGIRGGRDRHGRPLFGSSDPPRLIFSAGGKQLNRHLTIYQAIQRQLVLDEDDDERYNGSDFISSDGSRLWSDIYTITYQRADAQADRALVGGSSSATQSRSTRAGSGSSSNTDMSLHRMSLLDSILQGELPCDLEKSNPTYNIMALLRVLEGLNQLAPRLRVQAVSDDFSEGKISCLDELSATGARVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQVTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNERIGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLGMWRSNFSPDKQSMEIDGDELKNGKTDNISRLSPAASDIVQAPLGLFPRPWPPNADASDGSQFSKVIEHFRLVGRVIAKALQDGRLLDLPLSTALYKLVLGQELDLHDILSFDADFGKILQELQVLVSRKQYLESTGGDNQDAIANLCFRGAPIEDLCLDFTLPGYPDYILKPGEENVDINNLEEYISLVVDATVKTGIMRQMEAFRSGFNQVFDITSLQIFSPDELDYLLCGRRELWEAETLVDHIKFDHGYTAKSPAIINLLEIMGEFNPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSSTVSTAANGSSGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAISEGQGSFDLS* 1897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0183 1896 SMART arm_5 342 380 IPR000225 GO:0005515
Vvi3g0183 1896 SMART arm_5 299 339 IPR000225 GO:0005515
Vvi3g0183 1896 SMART arm_5 216 257 IPR000225 GO:0005515
Vvi3g0183 1896 MobiDBLite consensus disorder prediction 78 117 - -
Vvi3g0183 1896 SUPERFAMILY ARM repeat 184 651 IPR016024 -
Vvi3g0183 1896 FunFam HECT ubiquitin protein ligase family protein KAK 178 492 - -
Vvi3g0183 1896 MobiDBLite consensus disorder prediction 1284 1308 - -
Vvi3g0183 1896 Gene3D Hect, E3 ligase catalytic domains 1412 1657 - -
Vvi3g0183 1896 MobiDBLite consensus disorder prediction 1 142 - -
Vvi3g0183 1896 Gene3D Hect, E3 ligase catalytic domain 1766 1894 - -
Vvi3g0183 1896 MobiDBLite consensus disorder prediction 964 1157 - -
Vvi3g0183 1896 MobiDBLite consensus disorder prediction 10 75 - -
Vvi3g0183 1896 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 9 1896 IPR045322 GO:0006511|GO:0061630
Vvi3g0183 1896 SUPERFAMILY Hect, E3 ligase catalytic domain 1463 1889 IPR035983 GO:0004842
Vvi3g0183 1896 MobiDBLite consensus disorder prediction 967 1015 - -
Vvi3g0183 1896 Gene3D - 174 495 IPR011989 -
Vvi3g0183 1896 MobiDBLite consensus disorder prediction 1110 1131 - -
Vvi3g0183 1896 MobiDBLite consensus disorder prediction 1134 1157 - -
Vvi3g0183 1896 FunFam Putative E3 ubiquitin-protein ligase HECTD1 1764 1895 - -
Vvi3g0183 1896 SMART hect_3 1481 1896 IPR000569 GO:0004842
Vvi3g0183 1896 MobiDBLite consensus disorder prediction 693 719 - -
Vvi3g0183 1896 MobiDBLite consensus disorder prediction 1050 1075 - -
Vvi3g0183 1896 MobiDBLite consensus disorder prediction 660 719 - -
Vvi3g0183 1896 Pfam HECT-domain (ubiquitin-transferase) 1567 1896 IPR000569 GO:0004842
Vvi3g0183 1896 CDD HECTc 1470 1891 IPR000569 GO:0004842
Vvi3g0183 1896 MobiDBLite consensus disorder prediction 1076 1109 - -
Vvi3g0183 1896 FunFam E3 ubiquitin-protein ligase UPL3 1414 1656 - -
Vvi3g0183 1896 MobiDBLite consensus disorder prediction 1283 1308 - -
Vvi3g0183 1896 ProSiteProfiles HECT domain profile. 1494 1896 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0183 Vvi-Chr3 1612834 1639214 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0183 K10590 - vvi:100264024 3362.01