Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0182 ATGGGATTCGTCAGTAGTATATTGGGACTTTTTGGGTTCGGAGTGGGGATTTCTATTGGGCTTTTGGTTGGGTATTTTTTCTTTATCTACTTCGAATCCAGCGATGTCAAGGACCCCGATATTCGCCCATTAGCCGAGCAGGACTCAGAAAGCTTGCAGCGGTTGCTTCCAGAGCTACCCCTTTGGGTGAAAAATCCCGATTTTGATCGTGTTGACTGGCTGAACAAGTTTATTGAATACATGTGGCCTTATCTGGATAAGGCAATTTGCAAGACTGTAAAAGATACCGCAGCACCGATCATTGCTGAGCAAATTCTAAAGTATAAGATCGATGCAGTCGAATTTAAAACACTTACATTAGGATCCCTACCACCAACTTTTCAAGGGATAAAAGTCTATTCTACTGATGAGAAGGAGTTGATCATGGAGCCATGCTTGAAATGGGCAGCAAATCCAAATGTGACTGTTGCTGTTAAAGCTTTTGGGTTGAAAGCAACTGCTCAGGTGGTGGATTTGCAAGTCTTTGCTCTACCACGTATTACCATGAAGCCGTTGGTTCCTAGTTTTCCCTGCTTTGCCAACATCTTCGTGTCTCTAATGGAGAAGCCTCATGTTGATTTTGGACTAAAGCTTCTAGGGGCTGATCTTATGTCAATCCCTGGGCTCTACCGGTTTGTTCAGGAGCTTATCAAGGAACAGGTTGCCAACATGTATCTCTGGCCAAGAACCCTTGACGTACAAATTTTAGACATAGCCAACGCAATGAAGAGGCCTGTAGGAATTCTCACTGTTAAGGTTCTGAGGGCGATGAAACTCAAAAAGAAAGATCTCTTGGGAGCATCAGACCCCTATGTAAAACTAAGACTTACTGAAGACAAGCTTCCATCGAAGAAGACTACTGTGAAGCACAAAAACTTGAATCCTGAATGGAATGAAGAGTTTAACTTAGTTGTCAGAGTTCCCGGGGTGCAAGCTTTAGAGCTTTGTGTTTATGACTGGGAGCAGGTTGGGAAACATGACAAGATGGGAATGAACGTCGTGCCTTTGAAAGAACTTCCTCCGGATGAGCCAAAGATGATGACTCTTGACCTCCTTAAGAGCCTGGATCCAAACGATTCTCAAAATGACAAAGGCCGTGGACAGCTTGAGGTGGAATTGACATACAAACCTTTCAAGGAGGAGGACATGGTGAAGGAGAGTGATGATTTAGGTACACTGGAGAAGGCTCCTGAAGGAACACCACCTGGTGGAGGTCTGCTTGTGGTCATAGTCCATGAAGCACAAGATTTGGAAGGAAAGCACCATACTAATCCACTTGTCCGGATTCTTTTCAGAGGGGAGGAGAGAAAAACTAAGCCAATAAAGAAGAGCAGAGATCCAAGATGGCAAGAGGAGTTCCAGTTTATGCTGGAGGAACCTCCCATTAACGATAAACTGCATGTGGAAGTCATCAGTACCTCCAAGAGGATCGGCCTGCTGCATCCTAAGGAATCTCTGGGGTACATAGTTGTCAATCTTGCTGATGTCGTGACCAACAAACGGATCAACGAGAAGTACCACCTGATAGACTCAAAGAATGGGCAGATTCAGATTGAGCTGCAGTGGAGAACTAGTTCCTGA 1620 0.4469 MGFVSSILGLFGFGVGISIGLLVGYFFFIYFESSDVKDPDIRPLAEQDSESLQRLLPELPLWVKNPDFDRVDWLNKFIEYMWPYLDKAICKTVKDTAAPIIAEQILKYKIDAVEFKTLTLGSLPPTFQGIKVYSTDEKELIMEPCLKWAANPNVTVAVKAFGLKATAQVVDLQVFALPRITMKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADLMSIPGLYRFVQELIKEQVANMYLWPRTLDVQILDIANAMKRPVGILTVKVLRAMKLKKKDLLGASDPYVKLRLTEDKLPSKKTTVKHKNLNPEWNEEFNLVVRVPGVQALELCVYDWEQVGKHDKMGMNVVPLKELPPDEPKMMTLDLLKSLDPNDSQNDKGRGQLEVELTYKPFKEEDMVKESDDLGTLEKAPEGTPPGGGLLVVIVHEAQDLEGKHHTNPLVRILFRGEERKTKPIKKSRDPRWQEEFQFMLEEPPINDKLHVEVISTSKRIGLLHPKESLGYIVVNLADVVTNKRINEKYHLIDSKNGQIQIELQWRTSS* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0182 539 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 246 IPR039010 -
Vvi3g0182 539 CDD C2 262 364 - -
Vvi3g0182 539 ProSiteProfiles C2 domain profile. 402 519 IPR000008 -
Vvi3g0182 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 415 536 IPR035892 -
Vvi3g0182 539 Gene3D C2 domain 255 409 IPR035892 -
Vvi3g0182 539 CDD SMP_SYT 60 248 - -
Vvi3g0182 539 PRINTS C2 domain signature 326 334 IPR000008 -
Vvi3g0182 539 PRINTS C2 domain signature 277 289 IPR000008 -
Vvi3g0182 539 PRINTS C2 domain signature 304 317 IPR000008 -
Vvi3g0182 539 Pfam C2 domain 260 359 IPR000008 -
Vvi3g0182 539 Pfam C2 domain 419 521 IPR000008 -
Vvi3g0182 539 Gene3D C2 domain 419 538 IPR035892 -
Vvi3g0182 539 SMART C2_3c 261 361 IPR000008 -
Vvi3g0182 539 SMART C2_3c 419 518 IPR000008 -
Vvi3g0182 539 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 535 IPR045050 GO:0008289
Vvi3g0182 539 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Vvi3g0182 539 FunFam Synaptotagmin-2 isoform A 255 410 - -
Vvi3g0182 539 FunFam Extended synaptotagmin-2 419 537 - -
Vvi3g0182 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 393 IPR035892 -
Vvi3g0182 539 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0182 Vvi-Chr3 1595399 1600077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0182 258 518 Lipid Metabolism Gene Families AT3G61300 28.881 1.11e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0182 - - vvi:100241744 1086.63