Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi3g0179 | ATGGCTCGATACGACCGTGCGATCACCGTGTTTTCACCGGACGGCCACCTATTCCAGGTGGAGTACGCCCTGGAAGCCGTCCGTAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGCTGGGCTAAAAGCAGATGCACGTGTGTTGATAAATAGAGCACGTATTGAATGTCAGAGCCATAGGCTTACAGTCGAGGATCCTGTCACTGTTGAATATATTACTCGGTACATTGCTGGTCTTCAGCAGAAGTACACCCAGAGCGGCGGTGTAAGACCATTTGGCCTTTCAACTTTGATTATTGGCTTTGACCCCTACACAGGTGTTCCATCACTTTATCAGACAGACCCATCGGGAACATTTTCAGCATGGAAAGCCAATGCAACCGGGAGAAACTCAAATTCAATGCGGGAGTTCTTGGAAAAAAATTATAAAGAAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAGCATGGATTGCGGCAACTTGAAGAAGCTGAGATTGATGCCATTGTTGCTGAGATCGAAGCAGAGAAAGCAGCAGCTGAGGCTGCTAAGAAGGGCCCTCCCAAAGAAACCTAG | 750 | 0.4947 | MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTAKLQDSRTVRKIVNLDDHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIIGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQETVKLAIRALLEVVESGGKNIEIAVMTKEHGLRQLEEAEIDAIVAEIEAEKAAAEAAKKGPPKET* | 250 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi3g0179 | 249 | ProSitePatterns | Proteasome alpha-type subunits signature. | 4 | 26 | IPR000426 | GO:0006511|GO:0019773 | |
| Vvi3g0179 | 249 | Gene3D | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 3 | 245 | IPR029055 | - | |
| Vvi3g0179 | 249 | FunFam | Proteasome subunit alpha type-4 | 1 | 241 | - | - | |
| Vvi3g0179 | 249 | CDD | proteasome_alpha_type_7 | 4 | 210 | - | - | |
| Vvi3g0179 | 249 | Pfam | Proteasome subunit | 27 | 210 | IPR001353 | GO:0005839|GO:0051603 | |
| Vvi3g0179 | 249 | ProSiteProfiles | Proteasome alpha-type subunit profile. | 19 | 228 | IPR023332 | - | |
| Vvi3g0179 | 249 | PANTHER | PROTEASOME SUBUNIT ALPHA/BETA | 8 | 233 | - | - | |
| Vvi3g0179 | 249 | SUPERFAMILY | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 3 | 234 | IPR029055 | - | |
| Vvi3g0179 | 249 | Coils | Coil | 219 | 239 | - | - | |
| Vvi3g0179 | 249 | SMART | Proteasome_A_N_2 | 4 | 26 | IPR000426 | GO:0006511|GO:0019773 | |
| Vvi3g0179 | 249 | Pfam | Proteasome subunit A N-terminal signature | 4 | 26 | IPR000426 | GO:0006511|GO:0019773 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi3g0179 | Vvi-Chr3 | 1570696 | 1574690 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi3g0179 | K02731 | - | vvi:100257349 | 438.728 |