Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0178 ATGTTACCAAGAAGTCGAACTCTTCCAAGCAGGATTTACAATGGAGTTGTGGAAGAGCGGCAAGACATCAGGCACTACTTGCAGGTGGAAGTCCAGCCTAAACCCCATGGAGAGAGTGAAGCAATAAACCCTCAGGCCAACTATTCCAAGTGTTTTGATGATGATGGCCGCCTCAAAAGAACAGGAACTTTCTGGACCGCTTCATCCCATATTATCACTGCTGTCATAGGCTCAGGGGTTCTTTCACTGGCATGGGCAATAGGGCAGCTTGGTTGGGTTGCAGGGCCTATTGTAATGATCCTTTTCGCCTTTGTCAATCTATACTCTTCCAACCTCCTGGCCCAGTGTTACAGGTCAGGTGACCCTCTCACAGGACAAAGAAATTACACTTACATGGAAGCTGTCAAGGCTAACTTAGGAGGGAAGAAGGTCCTGGCATGTGGGTGGATTCAGTACTTGAACTTATTTGGCACTGCAATTGGGTACACAATTGCAGCATCAGTCAGCATGATGGCGATAAAGAGATCAAACTGTTTCCACAAAAGTGGGGGGAAAGATCCTTGTCACATGTCCAGCAATGGATACATGATCACCTTTGGAATCATAGAGATCATATTTTCTCAAATCCCAGACTTTGATCAAGTTTGGTGGCTCTCCATAGTTGCTGCTATTATGTCTTTCACGTACTCTAGTGTTGGTCTAGGCCTTGGCGTCGCCAAAGTTGCAGAAAATGGGAGCTTCAAAGGAAGCTTGACAGGCATAAGCATAGGGACAGTAACTCATGCAGGAGTAGTGACTTCAACACAGAAGTTGTGGAGGAGTTTGCAGGCACTTGGAGCTATTGCCTTTGCTTATTCTTTCTCACTCATTCTCATCGAAATTCAGGATACAATAAAATCTCCTCCTGCAGAGTACAAAACCATGAGGAAGGCAACGGTGCTGAGCATCGCTGTGACAACAGCATTCTATATGCTGTGTGGATGCTTTGGCTATGCTGCCTTTGGAGATCTAGCTCCGGGAAATCTTCTCACTGGCTTTGGATTCTATGACCCCTACTGGCTGTTAGACATAGCCAATATTGCAATCATCGTTCATCTTGTCGGGGCATATCAGGTCTATTGCCAGCCCTTATTCGCATTTGTGGAAAAATGGAGTGCACATAAGTGGCCGAAGAGCGACTTTGTGACTGAAGAATACGACTTGCCAATCCCTTGCTATGGGGTGTACCAGCTCAACTTCTTCCGTTTAGTATGGAGGACAATTTTTGTTGTGTTGACAACCCTTATAGCTATGCTCTTGCCCTTCTTCAATGATGTTGTGGGCATACTTGGAGCATTTGGGTTCTGGCCCTTGACAGTTTATTTCCCAGTTGAGATGTATATTTCCCAGAAGAAGATTGGACGGTGGACAAGCCGGTGGGTTGCCCTGCAGATACTAAGCTTTGCTTGTCTGCTTATTTCTCTAGCTGCGGCAGTTGGGTCTGTGGCTGGAGTTGTCCTAGATCTCAAGACTTACAAGCCATTCAAAACTAGTTATTAA 1539 0.4581 MLPRSRTLPSRIYNGVVEERQDIRHYLQVEVQPKPHGESEAINPQANYSKCFDDDGRLKRTGTFWTASSHIITAVIGSGVLSLAWAIGQLGWVAGPIVMILFAFVNLYSSNLLAQCYRSGDPLTGQRNYTYMEAVKANLGGKKVLACGWIQYLNLFGTAIGYTIAASVSMMAIKRSNCFHKSGGKDPCHMSSNGYMITFGIIEIIFSQIPDFDQVWWLSIVAAIMSFTYSSVGLGLGVAKVAENGSFKGSLTGISIGTVTHAGVVTSTQKLWRSLQALGAIAFAYSFSLILIEIQDTIKSPPAEYKTMRKATVLSIAVTTAFYMLCGCFGYAAFGDLAPGNLLTGFGFYDPYWLLDIANIAIIVHLVGAYQVYCQPLFAFVEKWSAHKWPKSDFVTEEYDLPIPCYGVYQLNFFRLVWRTIFVVLTTLIAMLLPFFNDVVGILGAFGFWPLTVYFPVEMYISQKKIGRWTSRWVALQILSFACLLISLAAAVGSVAGVVLDLKTYKPFKTSY* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0178 512 PANTHER OS05G0424000 PROTEIN-RELATED 64 495 - -
Vvi3g0178 512 FunFam Amino acid permease 6 57 502 - -
Vvi3g0178 512 Pfam Transmembrane amino acid transporter protein 60 499 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0178 Vvi-Chr3 1565251 1567724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0178 42 512 Organic Solute Cotransporters AT5G09220 71.610 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0178 K24917 - vvi:100262462 1027.7