Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0177 ATGTCTTCGAATCCTTATAGAAACCCTAATTCTCTCTACCCGGAAGTTGATCTCTCAAACCCAGAAGCCACTTCTCCTCTTATCTCAAACCCAACTTCTGCTTCATCTTCGTCGCTGTACCCTTCTCTTGAAGTGAAAGAGCTCGCTGAGAATCTTTTCCCGGACGAAAACGATGCCGTTTTACAAAACCCCAGTTCCCAACCATTCGAAGAAGTCCTCGTCAGAGTCTCCGGCGCCATCGTCCATCTCATCGACAAGCAACACAGCGTCGAGCTCGCTTCCGGAGTGCTTACCATAGTTCGGCTCCGGCAAGGCGAGAACGTGGTCGCTGTTCTTGCACGAATCGGCGATGAGATCCAGTGGCCATTGGCGAAAGATGAGGCAGCGGTGAAGCTCGATGAATCGCATTATTTCTTCAGTCTTCGCGTGCCCGAATCTGGGTCCGGCTCGGCTTCGAGCGATGATGATGGTGAGAGTGAGAATTTGTTGAACTATGGATTAACTATCGCGTCGAAGGGGCAAGAGGGATTGTTGAAGGAATTGGATGCGGTTTTGGAGAAGTACAGTTGTTTTTCGGTGCAGAAGGTGAAGGGGACGGTTGGGTGGGAGGTTTTAGATGGATCGGTTGCGAGAGAGACTTCTCCGGAGGATTTGGGATCGAAGAAGAAGAAGGAATTGATGGAGGAGAGGTCGGGGGCGTACTGGACGACACTGGCTCCTAATGTGGAGGATTACAGTGGGTGCGTTGCGAGGATGATTGCCGCCGGATCAGGGCAGCTCATCAAGGGAATCCTGTGGTCGGGCAATGTAACGGTGGATGGATTGAATTGGGGGAATGAGTTTCTGAAGAAAAGAATGGGGCCGGGTTCCAAATCCGAAATTAGTCCAGAGGCAATGAAGAGGATGAAAAGGGTTAAGAAGCTGACAAAGATGTCCGAGAAGGTGGCAACTGGAGTTCTTTCTGGGGTTGTTAAAGTCTCTGGATTCTTTACAAGTTCTATTGTGAACTCAAAAGTGGGCAAGAAATTTTTTAGCCTGTTGCCTGGAGAAATTGTCCTTGCTTCATTAGATGGATTTAATAAAGTCTGTGATGCTGTTGAAGTTGCTGGAAAGAACGTCATGTCTACCACCTCAGTTGTGACAACTGGGCTTGTTTCACAGAGGTATGGAGAACAGGCAGCACATGTGACACACGAGGGGCTTGGTGCTGCAGGGCATGCTATTGGGACTGCTTGGGCAGTGTTCAAGATACGAAAAGCTCTCAACCCGAAGAGCGCATTTAAGCCCACAAAACTTGCAAAAGCTGCTGCTGAAGCAAATTCTGCTAAACTGAAGACTAAACAAGCAAAGTAA 1353 0.4885 MSSNPYRNPNSLYPEVDLSNPEATSPLISNPTSASSSSLYPSLEVKELAENLFPDENDAVLQNPSSQPFEEVLVRVSGAIVHLIDKQHSVELASGVLTIVRLRQGENVVAVLARIGDEIQWPLAKDEAAVKLDESHYFFSLRVPESGSGSASSDDDGESENLLNYGLTIASKGQEGLLKELDAVLEKYSCFSVQKVKGTVGWEVLDGSVARETSPEDLGSKKKKELMEERSGAYWTTLAPNVEDYSGCVARMIAAGSGQLIKGILWSGNVTVDGLNWGNEFLKKRMGPGSKSEISPEAMKRMKRVKKLTKMSEKVATGVLSGVVKVSGFFTSSIVNSKVGKKFFSLLPGEIVLASLDGFNKVCDAVEVAGKNVMSTTSVVTTGLVSQRYGEQAAHVTHEGLGAAGHAIGTAWAVFKIRKALNPKSAFKPTKLAKAAAEANSAKLKTKQAK* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0177 450 PANTHER SPARTIN 44 446 IPR045036 -
Vvi3g0177 450 MobiDBLite consensus disorder prediction 1 38 - -
Vvi3g0177 450 Pfam Senescence domain 252 437 IPR009686 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0177 Vvi-Chr3 1560187 1564616 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0177 K19366 - vvi:100267615 822.002