Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0176 ATGCTTGTGTGGTGCAGACGCTATATGAAATGGTTCCACTTTATCATATGCTACCCTAAGTCAATGCTTAGAAATACCAAATCTATGATCTTCAAGAAAAATATGAAAACCCCACTTGCTATTCTGCAACTTTACAGCATCCATACTTCAACCCAACGCTACCCACATGGAAGCGACCCCATCAACTATTCAAAACTCTTGAGTTGTTATTTGAAGTCTGGGGATATCATAAATGCAGGGAAGCTGTTTGAAGAAATTCCTAAACGGGATGTAGTTTCATGGTCTATAATGATCCATGGTTATAATAGAAATGGGTTTCGGAGAAAATCCATGGAACTGTTTTCCCAGATGAGGATTTCAAGTTTGGTTCCAACTTCTTTCACCATGGTTGGTGTTCTTGTCAGCATTGCAGGCTTAGGAGACCCTGTGCTTGGGCAATGTGTTCACGGACTAATTCTCAAATATGGGCTTGACTCTGATTTTAGAGTGGTTACTGCTTTGTTGAATGCATATGCAAAATGCGGAAATGTGGTTGATTCTTATAGAGTGTTTGAGCAACTAGAGAATCCGGGTTTGGTCTCATGCAGTGCAATTGTTTCCGGGTTTGTCTACAATGAGCTCTTTGAAGAGGCTGTTGTATTGTTTAACCAGTTCCGGAAGCTTGGCATGGTGCCTAATGCTGCAACAGTATTGACTCTCATTCGAGCTTGTGTGGCTTTAGAGTCGCGGCGACTGTGTGAATCCATTCATGGGATGGTTGTAAAACTGAGTCTTGTTTTGGATGTGGCTGTTAACAACTCGGTTCTTGATATGTATTCAAGTATGCTGGATTTGGATGCTGCAACAAGAGTTTTTGAAGGGATGGAATGTAGAGATGTAATAAGCTGGACTACAATGATTAATTTACTGGTCTGTCTTGAATATGCTTCTGATGCTCTCATGCTTTTTCGCCAGATGAGAAATACCGGGATCTGTAATGATGTGGTGGTTGTCATGAATCTGATTTCAGCTTGTGCTATTTTAGGAGATTTGAAGAGAGGCAGAGAAATCCATACTCAAGCTATTGTATGTGGATTTGGATCAGAGCTCCCGCTTACAAACTCGATCATTGCAATGTATTCAAAGTGTGGCGACCTAGATTCTTCAAGAACTGTGTTTGATCAAACTACTGGGAAGAGTCTTGTTTCCTGGACAGCGATGATTTTAGGATGTGTGCAGAATGGATACCCAAGAGAAGCACTGAAGCTCTTGATTAAAATGAGAGGAGAAGAGAGTTTTTACCTTGATTCAATAATGCTGATAGGGGTTCTATCAGCTTCTGGTGAACTTGCTCTTTTGGAGCTCTGCCAGCAGCTCCATTGCTATGCTTTTGAATCTGGTTTCCCCCGATATAGATTGGTTCAGAATAGTCTGATATCAGCATACTCAAAGTGTGGAGATGTGGAACCTGCTTACAATGTGTTTGGGCAGATGGGTTATATCCGAGATATAGTATCTTGGAATGCAATTCTAAACGGGTATGGGATCAATGGCCATGGAGAAATTGCTGTCGCCCTCTACCATGAAATGAGGAAGGGCCGGGAAAATCCTGATGCTGCGACGTACCTTTGTGTTTTGAGTGCTTGTAGTCACTCAGGGTTGGTGGATGATGGTCTGGTTATTTTCAATCAGATGGTGGAAGAGCGTACAATCAGGCCTAGCCAAGACCACTGCGGGTGCATCGTTGACTTGCTTGCAAGAGCAGGCTGCTTCTCAGATGCAAGAGAGTTTGTAAGCCGATATATGGAGAAGATGGGTCCAAATGCTTGGAGGGCTTTGCTCAGTGGATGTCAGCTTCATGGTAATGTAGGGCTTGCAGAACTTGCAGCTAGAAGGGTGTGTGAACTGGATCCAGAAGAGCCCGGTCAAGTCGTTCTACTTTCAAATGTTTATGCATCAGTTGGGAGGTTCCAGGATGCTGAAGCTTTGAGAGCAAGTATGAAGAAGAAGGAATTGATCAAGAATCCGGGGATAAGCTTGCTTAATAGAATCCCATATGATGTTGGTTGA 2049 0.428 MLVWCRRYMKWFHFIICYPKSMLRNTKSMIFKKNMKTPLAILQLYSIHTSTQRYPHGSDPINYSKLLSCYLKSGDIINAGKLFEEIPKRDVVSWSIMIHGYNRNGFRRKSMELFSQMRISSLVPTSFTMVGVLVSIAGLGDPVLGQCVHGLILKYGLDSDFRVVTALLNAYAKCGNVVDSYRVFEQLENPGLVSCSAIVSGFVYNELFEEAVVLFNQFRKLGMVPNAATVLTLIRACVALESRRLCESIHGMVVKLSLVLDVAVNNSVLDMYSSMLDLDAATRVFEGMECRDVISWTTMINLLVCLEYASDALMLFRQMRNTGICNDVVVVMNLISACAILGDLKRGREIHTQAIVCGFGSELPLTNSIIAMYSKCGDLDSSRTVFDQTTGKSLVSWTAMILGCVQNGYPREALKLLIKMRGEESFYLDSIMLIGVLSASGELALLELCQQLHCYAFESGFPRYRLVQNSLISAYSKCGDVEPAYNVFGQMGYIRDIVSWNAILNGYGINGHGEIAVALYHEMRKGRENPDAATYLCVLSACSHSGLVDDGLVIFNQMVEERTIRPSQDHCGCIVDLLARAGCFSDAREFVSRYMEKMGPNAWRALLSGCQLHGNVGLAELAARRVCELDPEEPGQVVLLSNVYASVGRFQDAEALRASMKKKELIKNPGISLLNRIPYDVG* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0176 682 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 192 674 IPR046960 GO:0003723|GO:0009451
Vvi3g0176 682 FunFam Os01g0913400 protein 451 668 - -
Vvi3g0176 682 NCBIfam pentatricopeptide repeat 193 227 IPR002885 -
Vvi3g0176 682 NCBIfam pentatricopeptide repeat 92 125 IPR002885 -
Vvi3g0176 682 NCBIfam pentatricopeptide repeat 395 423 IPR002885 -
Vvi3g0176 682 NCBIfam pentatricopeptide repeat 498 531 IPR002885 -
Vvi3g0176 682 NCBIfam pentatricopeptide repeat 294 327 IPR002885 -
Vvi3g0176 682 NCBIfam pentatricopeptide repeat 534 561 IPR002885 -
Vvi3g0176 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Vvi3g0176 682 FunFam Pentatricopeptide repeat (PPR-like) superfamily protein 144 242 - -
Vvi3g0176 682 Pfam PPR repeat family 496 543 IPR002885 -
Vvi3g0176 682 Pfam PPR repeat 164 188 IPR002885 -
Vvi3g0176 682 Pfam PPR repeat 193 222 IPR002885 -
Vvi3g0176 682 Pfam PPR repeat 367 388 IPR002885 -
Vvi3g0176 682 Pfam PPR repeat 294 323 IPR002885 -
Vvi3g0176 682 Pfam PPR repeat 395 422 IPR002885 -
Vvi3g0176 682 Pfam PPR repeat 469 491 IPR002885 -
Vvi3g0176 682 Pfam PPR repeat 63 90 IPR002885 -
Vvi3g0176 682 Pfam PPR repeat 92 118 IPR002885 -
Vvi3g0176 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 124 IPR002885 -
Vvi3g0176 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Vvi3g0176 682 FunFam Pentatricopeptide repeat-containing protein 248 350 - -
Vvi3g0176 682 Gene3D Tetratricopeptide repeat domain 32 141 IPR011990 GO:0005515
Vvi3g0176 682 Gene3D Tetratricopeptide repeat domain 146 250 IPR011990 GO:0005515
Vvi3g0176 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 566 IPR002885 -
Vvi3g0176 682 FunFam Pentatricopeptide repeat-containing protein 351 450 - -
Vvi3g0176 682 Pfam E motif 613 673 IPR046848 -
Vvi3g0176 682 Gene3D Tetratricopeptide repeat domain 307 452 IPR011990 GO:0005515
Vvi3g0176 682 Gene3D Tetratricopeptide repeat domain 496 675 IPR011990 GO:0005515
Vvi3g0176 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 423 IPR002885 -
Vvi3g0176 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Vvi3g0176 682 FunFam Putative pentatricopeptide repeat-containing protein At2g01510 43 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0176 Vvi-Chr3 1549919 1551967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0176 47 674 Glycoside Hydrolase AT3G49170 30.251 5.07e-95 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0176 - - vvi:100260508 1359.74