Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0173 ATGGCTATGGCTTTCAAGATGGCGACGACCGGAATGTGGGTGACCGACGAGTGCAAAAACTCATTCATGGAGATGAAATGGAAGAAGGTTCACAGGTACATAGTGTTCAAGATCGATGAGGGATCCAAGCTGGTGACCGTCGATAAGGTCGGCGGGCCTGGGGAAGGCTACGACGAGCTCGCCGCGTCGCTGCCGACCGATGATTGTCGATACGCCGTCTTCGATTTCGACTTTGTCACCAATGATAACTGCAGGAAGAGCAAGATCTTCTTCATTGCCTGGTCACCAACGGCATCAAGGATAAGAGCAAAAATGTTATATGCGACATCAAAAGAAGGATTAAGGAGAGTGCTGGATGGAATACATTATGATATGCAAGCCACCGACCCAACAGAGATGGGGATGGATGTGATTAAAGATCGAGCTAAATAA 432 0.4838 MAMAFKMATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEGSKLVTVDKVGGPGEGYDELAASLPTDDCRYAVFDFDFVTNDNCRKSKIFFIAWSPTASRIRAKMLYATSKEGLRRVLDGIHYDMQATDPTEMGMDVIKDRAK* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0173 143 SUPERFAMILY Actin depolymerizing proteins 6 141 - -
Vvi3g0173 143 Pfam Cofilin/tropomyosin-type actin-binding protein 18 140 IPR002108 GO:0003779
Vvi3g0173 143 ProSiteProfiles ADF-H domain profile. 11 143 IPR002108 GO:0003779
Vvi3g0173 143 CDD ADF_cofilin_like 10 142 IPR017904 GO:0015629|GO:0030042
Vvi3g0173 143 FunFam Actin-depolymerizing factor 2 5 143 - -
Vvi3g0173 143 Gene3D Severin 8 143 IPR029006 -
Vvi3g0173 143 SMART adf_2 16 143 IPR002108 GO:0003779
Vvi3g0173 143 PANTHER COFILIN-RELATED 8 142 IPR017904 GO:0015629|GO:0030042
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0173 Vvi-Chr3 1527977 1528708 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0173 K05765 - vvi:100245314 297.745