Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0172 ATGGGTAGCTCTGAAGAACCCGACAGGACTAGTCTCCTCCATGACTCTTCATCTCCGACTCACCCTCTCCTCTCCAAATCCTACCCTTCACCCTCAATTTCAGAACCTCAGCCTGAATCCTCCGAACCTGACCAGACCCAGTTCCTCCAGATCTCCTACAATTACGGGCCTAGACCCTTCAAGGACCTCCCCTTTCTCATCCTCTTTCTGGTCGTCGTTCTCTGCACTTTCGGCTTTGGCATCTTCGCAGTTGTGAATCGGAACCCCAATTCTTCCAGCGTTTCTTCTTATTCTTATGACTCCAGTTCCACTTCTTGTGTCAAGAACTCCACTGCCTCGCTGAAGCAACAACCCATTTCGGATTACTTGAAACTTTCGTCGAGTTCGCATTTCTTGAAGGATTTGATATGGACCCTTGTAGTTACTTTGATTTTGAGCATACCCTTTTCTTGGCTTCTTCTTTTGTCGCTCAAGAATTACACCAAACAAGTGGTCTACGCCTCGCTTCCCTTCTTTGTTGTGATGCCCATTTTCTTTGATGTGTATTGGTTTGTGGCTTGTACTGTTAGCTCGAGTTGCAGCGAGGCGTTTCCTTTGGTGTATAGGATTTTGTTGCTTGTGTTTGTGTTTTTGTTTATTGGGGTGATCGTGTGGATAATTGTGGCCAACTGGCATAGAATTGAATTGACTGTGGATATAATTGGGATTGCCTCCCATTCGCTATCGAGGAATTTGGGGCTGTTTGTGGTTCTTCCATGTTTGACTTTCAGTTTGGTGATTTACTATGCTCCGATAGTTGTGTTTTTGGTGTTTGCGAGGTTGAATGGGAAGATTGTGCCGCGGGAATCCAGTGGAGAGTATTATTGTGTTTGGAAGCAGGATAGTTGGGTGCCTGCATATTATACATTGGCAATTCTAACAATGTTGTGGTCTGCAACAGCTATGGTGGAGCTGCAGGTTTATGTGATTAGTGGGACTATTGCACAGTGGTACTTTGCAAAGGATCACGATTCCACCCCAAAGAGGAGTATAAGAAGTTCTTTGAGGAATGCCTTGGGTCCCTCTTCTGGCACAGTATGTCTATCTGGATTACTTATTTGTGCTGTTCATGTGGTGCGTGCTGCTGTTGATAGTGCAAGACAAGAAGAACTTCAGGGAATAGTGAACCTTATGCTCCGATGCTGCGTTAATGCCTTGCTGACAGCTATTGATTTTCTTAACAAGTTCACCATCAATTTTGCAGCAATAACTGGTGAAGCTTACTGTACATCTGCAAGGATGACATATGAGCTTCTAAAGCGTAATCTACTTTCTGCTGTTTTTGTGGAGACTGTCTCCTCTCGAATATTAGGTGGCATTGTTTTTGTGTTCTCAGCAATATATGCAATTGTGGCTTGTGCTATCTTAAAGGCTGTAAGCAATCTTGGAGCTGATGCATACTTTGTGGCCGCTCTGGCATGGGTACTGCTGATCTTGGTGCTGGGTTTCTTTGTTCATGTGCTCGACAATGTGATTGACACAGTTTATGTGTGCTATGCCATAGATAGGGACAGGGGGGAGGTTTGTAAACAGGAGGTTCATGAAGTTTATGTTAACCTACCCATCCGAAGGAACCATAGATCATCTCTTGCCAACAGAACAGTAGGTGTATAG 1653 0.4453 MGSSEEPDRTSLLHDSSSPTHPLLSKSYPSPSISEPQPESSEPDQTQFLQISYNYGPRPFKDLPFLILFLVVVLCTFGFGIFAVVNRNPNSSSVSSYSYDSSSTSCVKNSTASLKQQPISDYLKLSSSSHFLKDLIWTLVVTLILSIPFSWLLLLSLKNYTKQVVYASLPFFVVMPIFFDVYWFVACTVSSSCSEAFPLVYRILLLVFVFLFIGVIVWIIVANWHRIELTVDIIGIASHSLSRNLGLFVVLPCLTFSLVIYYAPIVVFLVFARLNGKIVPRESSGEYYCVWKQDSWVPAYYTLAILTMLWSATAMVELQVYVISGTIAQWYFAKDHDSTPKRSIRSSLRNALGPSSGTVCLSGLLICAVHVVRAAVDSARQEELQGIVNLMLRCCVNALLTAIDFLNKFTINFAAITGEAYCTSARMTYELLKRNLLSAVFVETVSSRILGGIVFVFSAIYAIVACAILKAVSNLGADAYFVAALAWVLLILVLGFFVHVLDNVIDTVYVCYAIDRDRGEVCKQEVHEVYVNLPIRRNHRSSLANRTVGV* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0172 550 MobiDBLite consensus disorder prediction 1 45 - -
Vvi3g0172 550 MobiDBLite consensus disorder prediction 13 45 - -
Vvi3g0172 550 Pfam Plasma-membrane choline transporter 207 517 IPR007603 GO:0022857|GO:0055085
Vvi3g0172 550 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 30 517 IPR007603 GO:0022857|GO:0055085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0172 - - vvi:100250440 1008.82