Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0169 ATGATGTATGGTCTGCCCTTTTGCTTCCTGCTTCTCTTCTTCCTTGCAGACCCTCCATTAGCTGCTCCTTATGATGGGCCTCTATATGATTTTTCTGCCTACACTCAGTGCAAAACTCGGGCCGAGGGCCCTCTTTACAATGGTGGGATCCTCAAAGGCGCCCGCTGGGATATCCCACGTGTGCTCGCTGATGGTGTTTATTCTCCCGCCTTCGTCCTGCGCAACCTCACCACTGGCACCAAGTACTGTTTCTCCAGTTGGGTGAAGATAAAGGGTGCAGACTCAGCTCCTATAAGGGCAAGCCTAATGTCAGAAAAAAAAACAATCAACTGTGTAGGGACGGTTACTGCTAGGCGTGGATGCTGGTCTTTTCTAAAGGGTGGGTTCGTTCTTGATGAACCCTTGGATTACTCTCTCCTCTTCTTTCAGAATTCAGATGAGAGAGCTGTTGATTTAGCAATCACAAGTGCTTCTTTGCAGCCGTTCACCGATCAGGAGTGGAGCACAAATCAACAATATATAATCAACACTGAAAGGAAACGTGCAGTCACAATCCATGTAGCAAACACACAGGGAGAGAGGCTGCAAGGAGCAGAAATTACAGTAGATCAAGTCTCAAAGGATTTCCCATTTGGATCTGCTATAGCAAAGACCATTCTTGGGAATTTGCCTTATCAGAACTGGTTCGTGAAGCGATTCAATGCTGCAGTGTTTGAAAATGAGCTCAAGTGGTATGCAACAGAGCCTGATCCTGGGAACATCACCTATGCCTTAGCAGACCAAATGTTGGAATTCGTCCGAGCAAACCAGATTGTTGCTAGAGGGCACAATATCTTCTGGGAGGACCCCAAGTACACGCCTGCATGGGTTCGGAACCTTTCAGGCCCTGCCCTACAATCAGCTGTCAACAACAGGATTCAAAGTCTAATGAGCAAGTACAAAGATGAATTTGTACATTGGGATGTTAGTAATGAAATGCTTCACTTTGATTTCTATGAGCAGCGGCTAGGCCCTGATGCCACCCTGCATTTCTATGAGACTGCACACGAGTCAGACCCCCTAGCAACCCTCTTCATGAATGATTTTAATGTGGTGGAGACTTGCAGTGATGTGAATTCAACAGTGGATGCATATATTTCAAGGCTAAGAGAGCTCAGCAGGGGTGGAGCAACCATGAGTGGAATTGGCCTTGAGGGCCATTTCACAATACCAAACCCTCCTCTTATCAGGGCTATCCTAGACAAGTTGGCCACTCTGCAGCTTCCCATTTGGCTCACAGAAATAGATATCAGCAATACACTTAGCAAGGAAACACAGGCTGTATATCTAGAACAAGTACTGAGAGAAGGCTTTTCACATCCTTCAGTGAATGGGATAATGCTGTGGACTGCACTTCATTCATATGGGTGTTACCAAATGTGCCTAACAGATAATAATTTTCATAACCTCCCTGCTGGTGATGTGGTAGACAAGATCCTGAAAGAATGGCAAACTGGGGAGATAGGGGGTCAGACTGATGACCATGGTTCGTATAGCTTTTTCGGTTTCTTGGGTGAATACCAGGTTACTGTAAGATATGGCAACAGAACTGCAAATTCAACATTCTCTCTATGCAGAGGAGATGAAACCAGACACTTCAGCATTCAACTATAA 1653 0.4574 MMYGLPFCFLLLFFLADPPLAAPYDGPLYDFSAYTQCKTRAEGPLYNGGILKGARWDIPRVLADGVYSPAFVLRNLTTGTKYCFSSWVKIKGADSAPIRASLMSEKKTINCVGTVTARRGCWSFLKGGFVLDEPLDYSLLFFQNSDERAVDLAITSASLQPFTDQEWSTNQQYIINTERKRAVTIHVANTQGERLQGAEITVDQVSKDFPFGSAIAKTILGNLPYQNWFVKRFNAAVFENELKWYATEPDPGNITYALADQMLEFVRANQIVARGHNIFWEDPKYTPAWVRNLSGPALQSAVNNRIQSLMSKYKDEFVHWDVSNEMLHFDFYEQRLGPDATLHFYETAHESDPLATLFMNDFNVVETCSDVNSTVDAYISRLRELSRGGATMSGIGLEGHFTIPNPPLIRAILDKLATLQLPIWLTEIDISNTLSKETQAVYLEQVLREGFSHPSVNGIMLWTALHSYGCYQMCLTDNNFHNLPAGDVVDKILKEWQTGEIGGQTDDHGSYSFFGFLGEYQVTVRYGNRTANSTFSLCRGDETRHFSIQL* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0169 550 Gene3D Glycosidases 199 507 - -
Vvi3g0169 550 PRINTS Glycosyl hydrolase family 10 signature 355 366 IPR001000 GO:0004553|GO:0005975
Vvi3g0169 550 PRINTS Glycosyl hydrolase family 10 signature 317 328 IPR001000 GO:0004553|GO:0005975
Vvi3g0169 550 PRINTS Glycosyl hydrolase family 10 signature 388 400 IPR001000 GO:0004553|GO:0005975
Vvi3g0169 550 PRINTS Glycosyl hydrolase family 10 signature 273 285 IPR001000 GO:0004553|GO:0005975
Vvi3g0169 550 Pfam Glycosyl hydrolase family 10 204 465 IPR001000 GO:0004553|GO:0005975
Vvi3g0169 550 Gene3D - 63 161 - -
Vvi3g0169 550 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 196 492 IPR001000 GO:0004553|GO:0005975
Vvi3g0169 550 SMART glyco_10 242 493 IPR001000 GO:0004553|GO:0005975
Vvi3g0169 550 SUPERFAMILY Galactose-binding domain-like 73 159 IPR008979 -
Vvi3g0169 550 SUPERFAMILY (Trans)glycosidases 194 499 IPR017853 -
Vvi3g0169 550 PANTHER GLYCOSYL HYDROLASE 75 541 IPR044846 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0169 Vvi-Chr3 1497503 1500073 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0169 25 550 Glycoside Hydrolase AT4G38650 66.604 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0169 - - vvi:100248768 1106.66