Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0168 ATGGGTCGTCTCTCTTGCTGCTCTTCCATTTTCATCTTGAACATCTCACTCATGGCCTTTTCCACTGGTGTTTTGGGTGCTACATTCACGTTTGTGAACAGGTGCGAGTACACTGTGTGGCCGGGAATTCTCGCAAATGCCGGCAGTGCCAGGCTCGACAGCACTGGCTTCGAGCTACCAAAGGACACTTCCCGTTCGTTTCTGGCTCCGACAGGTTGGTCCGGTAGGTTCTGGGGGCGAACAGGGTGCAACTTTGACGGATCTGGGTTGGGTTCTTGCGTCACTGGCGACTGTGGGTCGGGGACCATCGAATGCAACGGCGCCGGTGCTGCCCCGCCGGCGACACTGGCGGAGTTCACTCTCGGTACCGGCGGGCAGGACTTCTACGACGTGAGCCTCGTCGATGGCTACAACCTGCCGATGATAGTGGAAGGGAGTGGTGGGTCGGGAATGTGCGCGTCGACGGGCTGCACGGTGGATCTCAACCAGGGCTGTCCGGCGGAACTGAAGGTCGGAGACGGCAGCGCGTGCAGGAGCGCGTGCGAAGCGTTTGGGAGCCCGGAGTACTGTTGCAGCGGCGCGTACAGTACGCCCGCCACCTGCCGGCCGTCGGTGTACTCGGAGATGTTCAAGTCCGCTTGCCCCAGATCCTACAGCTATGCCTATGATGATGCCACCAGTACCTTCACATGTGCCGGCGCTGATTATACGGTGACGTTTTGCCCCTCATCTCCAAGTCAGAAATCTTCAAGAGAGTCTTCACCAACGACCACAGGTACTCCAACAGATGAGCCGGGAGTATCAGGGTCCGGAACCTATGAGCAAGGAGTATCAGGGTCCGGAACCTATGAGCCAGGGGCATCAGGGTCCGGAACAATGGGATCAATGACAATCGGCTCAGGGTCAGGCTCAGACTCTGGAGCAATGCTGGCAGATGGGTCATGGTTAGCTGGTTTAGCCATGGGAGACTCAGCCAGGGCTCACTCTCCATCATCATTCGCTGCCTCTTTAGCTCTCTCTTTCCTCCTCTTCTCCTTTGTTTACTTGTAG 1050 0.5762 MGRLSCCSSIFILNISLMAFSTGVLGATFTFVNRCEYTVWPGILANAGSARLDSTGFELPKDTSRSFLAPTGWSGRFWGRTGCNFDGSGLGSCVTGDCGSGTIECNGAGAAPPATLAEFTLGTGGQDFYDVSLVDGYNLPMIVEGSGGSGMCASTGCTVDLNQGCPAELKVGDGSACRSACEAFGSPEYCCSGAYSTPATCRPSVYSEMFKSACPRSYSYAYDDATSTFTCAGADYTVTFCPSSPSQKSSRESSPTTTGTPTDEPGVSGSGTYEQGVSGSGTYEPGASGSGTMGSMTIGSGSGSDSGAMLADGSWLAGLAMGDSARAHSPSSFAASLALSFLLFSFVYL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0168 349 Gene3D Thaumatin 27 242 IPR037176 -
Vvi3g0168 349 ProSiteProfiles Thaumatin family profile. 26 242 IPR001938 -
Vvi3g0168 349 Pfam Thaumatin family 33 242 IPR001938 -
Vvi3g0168 349 PRINTS Pathogenesis-related protein signature 89 118 IPR001938 -
Vvi3g0168 349 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Vvi3g0168 349 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Vvi3g0168 349 PRINTS Pathogenesis-related protein signature 232 241 IPR001938 -
Vvi3g0168 349 PRINTS Pathogenesis-related protein signature 28 40 IPR001938 -
Vvi3g0168 349 PANTHER OS03G0233200 PROTEIN 15 242 IPR001938 -
Vvi3g0168 349 FunFam THAUMATIN-LIKE PROTEIN 1 27 242 - -
Vvi3g0168 349 SUPERFAMILY Osmotin, thaumatin-like protein 27 243 IPR037176 -
Vvi3g0168 349 CDD TLP-PA 28 241 - -
Vvi3g0168 349 SMART tha2 29 242 IPR001938 -
Vvi3g0168 349 MobiDBLite consensus disorder prediction 242 298 - -
Vvi3g0168 349 ProSitePatterns Thaumatin family signature. 89 105 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0168 Vvi-Chr3 1493153 1494510 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0168 20 260 Receptor kinase-like Gene Family AT5G38280 49.801 6.53e-78 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0168 - - vvi:100265907 626.706