Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0167 ATGGATCGTCCCGTCATCTTTGTTGCCACCATTCTGGCCCTCCTCTGTGTCTCAGAAGTTGATTCAGCAACGTTCAGACTCGTCAACAAGTGCCGCCACACAATCTGGCCGGGATTTTTGTCTGGCGCCAACACGGCGCCCCTCGCTTCCACAGGCTTTGTTCTCAAGAGTGGCAAATCCAGGACCATCTCGGTGCCCAGATCATGGTCCGGTCGGATGTGGGGTCGAACCCTTTGTGCCGAAGACGATTCCGGGAAGTTTTCTTGCGCCACCGCCGATTGTGGCTCCGGGAAGGTGGAGTGCGATGGAGGCAACGCCGAACCGCCGGCGACTTTGGCGGAGTTCACGTTGAACGGCGACCAAGGTTTGGACTTTTACGACGTGAGCTTGGTTGATGGGTACAATCTCCCCATGCTGGTGGTGGCAAGGGGTGGCCACGGCGGTGACTGCAGCGCCACCGGGTGTCTCGTCGACCTGAACGGCGCGTGCCCGAAGGAGCTGAGGGTGGTGGCTTCGGCGACGAACGGCAGCCGCGGCGCGAGTGTCGCGTGTAAAAGCGCGTGTGAGGCTTTCGGAGATCCGATGTATTGCTGCAGTCAGGCTTATTCTACGCCCGACACATGTCAACCATCAGTGTACTCTCAGTTCTTTAAACATGCTTGCCCACGCTCCTATAGCTACGCGTATGATGATAAGACGAGCACCTTCACTTGTGCCTCTGCAGATTACATTATCATCTTTTGTCCATCCCCTTTCACCAGCCAAAAAGTGTTGGCGTTGCGGAGAGAAGCAGCAGAGCTGCCACTAGTGAACAAAACCATGATGTACATAGGAAGAAAATATGCGAGTGGCACTTCATCCCCAGGTCGGGTTCAAGAGCAAATCATAGCTCATGGTGCCTCCATTGTGGTGTCGCTATTGCTCCTCTTGCTATTTTTGTAA 942 0.551 MDRPVIFVATILALLCVSEVDSATFRLVNKCRHTIWPGFLSGANTAPLASTGFVLKSGKSRTISVPRSWSGRMWGRTLCAEDDSGKFSCATADCGSGKVECDGGNAEPPATLAEFTLNGDQGLDFYDVSLVDGYNLPMLVVARGGHGGDCSATGCLVDLNGACPKELRVVASATNGSRGASVACKSACEAFGDPMYCCSQAYSTPDTCQPSVYSQFFKHACPRSYSYAYDDKTSTFTCASADYIIIFCPSPFTSQKVLALRREAAELPLVNKTMMYIGRKYASGTSSPGRVQEQIIAHGASIVVSLLLLLLFL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0167 313 ProSitePatterns Thaumatin family signature. 85 101 IPR017949 -
Vvi3g0167 313 Gene3D Thaumatin 23 249 IPR037176 -
Vvi3g0167 313 PANTHER OS03G0233200 PROTEIN 10 249 IPR001938 -
Vvi3g0167 313 ProSiteProfiles Thaumatin family profile. 22 249 IPR001938 -
Vvi3g0167 313 SUPERFAMILY Osmotin, thaumatin-like protein 23 250 IPR037176 -
Vvi3g0167 313 SMART tha2 25 249 IPR001938 -
Vvi3g0167 313 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Vvi3g0167 313 PRINTS Pathogenesis-related protein signature 124 140 IPR001938 -
Vvi3g0167 313 PRINTS Pathogenesis-related protein signature 239 248 IPR001938 -
Vvi3g0167 313 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Vvi3g0167 313 FunFam THAUMATIN-LIKE PROTEIN 1 23 249 - -
Vvi3g0167 313 Pfam Thaumatin family 29 249 IPR001938 -
Vvi3g0167 313 CDD TLP-PA 24 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0167 Vvi-Chr3 1484329 1485994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0167 11 254 Receptor kinase-like Gene Family AT5G38280 50.407 1.18e-84 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0167 - - vvi:100232855 622.083