Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0163 ATGGCGGACATAGTTAAGCAAATCTTGACGAGGCCGATACAATTGGCAGAGCAGGTGTCTAAGGCGGCAGAAGGGGCCAACTCGTTTAAACAGGATTGCTTGGAGCTTAAGTCCAAGACCGATAAGTTGGCGGTCCTCCTCCGCCAGGCTGCGCGTGCTAGCTCGTATGAGCGCCCCATGCGCCGCATCATTGAGGATACTGAGCAGGTCCTGGATAAGGCGCTTGCGCTGGTGATAAAGTGTCGTGCCAATGGCCTCATGAAGCGGGTGTTCACCATCATTCCTGCAGCTGCATTCCGGAAAACATCACTGCAGCTGGAGAATTCGATTGGTGACGTGTCCTGGCTGCTCCGCGTGTCGGCATCTGCCGATGATCGCGATGATGAGTACCTGGGTCTCCCTCCAATCGCTGCCAATGAGCCCATTCTATGCCTGATATGGGAACAGATTGCTATTCTTCACACGGGTTCACTTGAGGATAGGTCTGATGCTGCTGTGTCTCTGGTCTCCTTGGCCCGCGACAATGATCGGTATGGAAAGCTCATTATTGAGGAAGGAGGGGTTCCACCCCTTCTAAAACTGGCCAAGGAGGGAAAGATGGAAGGTCAGGAGAGTGCTGCAAAGGCTCTTGGTCTTCTAGGACGCGACCCGGAAAGCGTAGAACACATTGTGAATGCAGGTGTGTGCTCAGTGTTTGCGAAAATCCTCAAAGAAGGTAGGATGAAGGTTCAGGCGGTGGTGGCTTGGGCTGTCTCAGAATTGGCTGCCCATCACCCCAAATGCCAGGATCACTTCGCACAAAACAATATAATCCGGTTGCTTGTTAGCCATCTAGCATTCGAGACTGTTCAAGAACACAGCAAATATGCCATTGCCAGCAAACAGACGATGTCGATTCATTCAGTTGTGATGGCAAGTAATAACCCCAATCCCAATCCTAATCCCAACTGTAACAAGGGAAATGAAGATGAGGTCACCGCCCACATCCCTCATCCAACTGGAAACCAAAACCCGAGCCAGATGCAAAATGTGGTTACTAACACCATGGCAATGAGATCAGTATCCAAACCGCCGCCTATGCCACAGCAACCGCAGGGGCAAAACCATGCAATGAACAACAACCCAAACCAAGCCAAGGCAAACAACAGCAACCCGAAGTCGAACAACCATCATCAGCAACATGCTTTAGCTGGGACAAGCATCAAGGGGAGGGAGTTTGAGGATCCAGCCACCAAGGCTGAAATGAAGGCAATGGCAGCAAGAGCCCTGTGGCACCTCTGTGAGGGAAATGCCCCTATATGCCATATAATCACTGAATCAAAAGCACTTCTATGCTTTGCAGTTTTACTAGAGAAGGGCCATGATGATGTTCAGTTCAATTCAGCCATGGCATTGATGGAAATCACAGCAGTTGCTGAGCAAAACTCTGACCTGAGGCGCTCTGCCTTCAAGCCCACCTCCCCAGCTGCAAGAGCTGTGGTTGAGCAGCTACTAAAAATAATTGAAAAGGCAGACTCGGATCTTCTCATCCCCTGCATCAAATCCGTTGGGAATTTGGCCAGGACTTTCAGGGCAACTGAAACCAGAATCATTGGACCATTAGTGAGACTTCTGGACGAAAGAGAACCAGAGGTTTCAAAGGAGGCAGCCATTGCACTCATTAAGTTTGCCAGCACTGAGAATTATCTCCACCTCAATCACTCCAAAGCAATCATACAAGCAGCTGGGATTAAGCATCTGATTCAGCTGGTCTACTTTGGGGAACAAATGGTTCAGTTTCCTGCACTGATCCTCCTATGCTATGTTGCCATGCATGTCCCTGACAGTGAGGTACTGGCAGAGGAAAAGATCCGAATAGTTCTGGAGTGGGCATCAAAGCAGGGGAGTATGATGCAGGATCCAGAGATTGAGACACTGATAAACGAAGCCAAAAGCAGGCTCGAACTCTATCAAGCCAGCTCTTCAAGAGGACACCCCTGA 1980 0.4995 MADIVKQILTRPIQLAEQVSKAAEGANSFKQDCLELKSKTDKLAVLLRQAARASSYERPMRRIIEDTEQVLDKALALVIKCRANGLMKRVFTIIPAAAFRKTSLQLENSIGDVSWLLRVSASADDRDDEYLGLPPIAANEPILCLIWEQIAILHTGSLEDRSDAAVSLVSLARDNDRYGKLIIEEGGVPPLLKLAKEGKMEGQESAAKALGLLGRDPESVEHIVNAGVCSVFAKILKEGRMKVQAVVAWAVSELAAHHPKCQDHFAQNNIIRLLVSHLAFETVQEHSKYAIASKQTMSIHSVVMASNNPNPNPNPNCNKGNEDEVTAHIPHPTGNQNPSQMQNVVTNTMAMRSVSKPPPMPQQPQGQNHAMNNNPNQAKANNSNPKSNNHHQQHALAGTSIKGREFEDPATKAEMKAMAARALWHLCEGNAPICHIITESKALLCFAVLLEKGHDDVQFNSAMALMEITAVAEQNSDLRRSAFKPTSPAARAVVEQLLKIIEKADSDLLIPCIKSVGNLARTFRATETRIIGPLVRLLDEREPEVSKEAAIALIKFASTENYLHLNHSKAIIQAAGIKHLIQLVYFGEQMVQFPALILLCYVAMHVPDSEVLAEEKIRIVLEWASKQGSMMQDPEIETLINEAKSRLELYQASSSRGHP* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0163 659 MobiDBLite consensus disorder prediction 304 321 - -
Vvi3g0163 659 SMART arm_5 174 215 IPR000225 GO:0005515
Vvi3g0163 659 SMART arm_5 430 470 IPR000225 GO:0005515
Vvi3g0163 659 SMART arm_5 564 604 IPR000225 GO:0005515
Vvi3g0163 659 SMART arm_5 216 256 IPR000225 GO:0005515
Vvi3g0163 659 SUPERFAMILY ARM repeat 150 624 IPR016024 -
Vvi3g0163 659 Gene3D - 148 329 IPR011989 -
Vvi3g0163 659 MobiDBLite consensus disorder prediction 352 403 - -
Vvi3g0163 659 MobiDBLite consensus disorder prediction 304 340 - -
Vvi3g0163 659 Gene3D - 2 119 IPR036537 GO:0007166
Vvi3g0163 659 FunFam Armadillo repeat only 2 391 647 - -
Vvi3g0163 659 Gene3D - 401 640 IPR011989 -
Vvi3g0163 659 MobiDBLite consensus disorder prediction 365 396 - -
Vvi3g0163 659 FunFam Armadillo repeat only 2 148 317 - -
Vvi3g0163 659 PANTHER ARMADILLO REPEAT ONLY 4 1 654 - -
Vvi3g0163 659 FunFam Armadillo repeat only 4 2 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0163 Vvi-Chr3 1459600 1461579 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0163 - - vvi:100264182 1238.4