Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0159 ATGCCCTCTCTCTCCTCTCCAAATCTCAATTTCTCACCGTTCCGTACAAATCCCAGGAAGCCCAGACGCCGTCCCTGTCTCGTAGAAGCCATCGTCAAGCTCTGCAAGAAAAACAAGCTAAACGAAGCCGTTTCGTCTCTGGAAAACCTCGCACGGCGAGGCCTGCGCCTCGATTCTCGAACACTTGCGTCCCTCTTGCAACACTGCGCGGATTCCAGGGCTCTCAGAGAAGGCAAAAGGGTCCACCTCCATTTGAAGCTTACGGGTCTGAAGAGGCCCGGTACATTTTTATCTAATCATTTAATTAATATGTATGCGAAATGTGGCAAAGAGGTTGAAGCTCGTAAAGTGTTTGATAAAATGTCTGCTAGAAATCTGTATTCTTGGAACAATATGCTTTCTGGGTATGCTAAATTGGGAATGATAAAGCCAGCTAGGAAGTTGTTTGACAAAATGCCTGAGAAGGATGTTGTGTCATGGAATACTATGGTAATCGCCCATGCTCAGTGTGGTTATTGGGATGAAGCATTGAGGTTTTACAGTGAGTTTCGGCAGTTGGGTATTCAGTGTAACGGGTTTAGTTTCGCTGGCGTCTTGACTGTTTGTGTAAAGTTGAAGGAAGTAGGGCTTACTAGGCAGGTTCATGGGCAGATTCTGGTAGCTGGGTTTTTGTCTAATGTTGTGCTTTCAAGCTCAGTTCTCGATGCTTATGTGAAATGCGGGTTGATGGGTGATGCGAGGAAGTTGTTTGATGAGATGTCTGCTAGAGACGTTCTTGCATGGACTACCATGGTTTCAGGATATGCCAAATGGGGTGATATGAAATCAGCTAATGAATTATTTGTTGAGATGCCTGAGAAGAATCCAGTCTCATGGACTGCTTTGATTTCTGGGTATGCCAGAAATGGTATGGGGCACAAGGCCCTTGAATTGTTCACAAAGATGATGCTGTTTCATGTTAGACCTGATCAATTCACGTTCAGTAGTTGCCTTTGTGCTTGTGCTAGTATAGCTTCACTTAAGCATGGTAAACAAATTCATGCCTATTTGTTACGAATTAATTTCCAACCTAATACCATAGTTGTTAGCGCACTCATCGACATGTACTCAAAATGTGGAAGCTTGGGAATTGGAAGGAAGGTTTTTGATCTTATGGGTAATAAGCTAGATGTTGTATTGTGGAACACGATTATATCTGCTTTGGCACAGCATGGTTGTGGAGAAGAGGCAATACAGATGCTTGATGACATGGTAAGATCAGGAGCAAAGCCAGATAAAATTACCTTTGTCGTCATTCTTAATGCATGTAGTCATTCAGGCCTTGTGCAGCAAGGGCTTAATTTCTTTGAGTCCATGTCTTGTGATTATGGCATTGTTCCCAGTCAGGAACATTATGCATGCTTAATTGATCTGTTGGGTCGAGCTGGATGTTTTGAGGAGGTAATGGACCAGCTTGAGAAGATGCCTTATAAGCCTGATGATCGTGTTTGGAATGCCTTACTAGGTGTTTGTAGGATTCATGGACATATAGAGTTGGGAAGAAAAGCAGCTGAACGCCTTATTGAGTTGGAACCTCAATCCTCCACAGCCTATGTATTACTTTCAAGTATATATGCTGTACTTGGGAGGTGGGAGTCAGTACAGAAGGTTAGACAGCTTATGAATGAGAGACAGGTCAAGAAAGAGCGAGCCATTAGTTGGCTTGAAATTGAAAATAAGGTGCATAGTTTTAGTGTATCAGATAGTTCACACCCTCTGAAAGAACAAATATACTCGGTTTTGGAACAGTTAGCTGGCCAGATGGAAGAAGATGCTTCATTATTTATCGCTCAAAGGTAA 1839 0.4296 MPSLSSPNLNFSPFRTNPRKPRRRPCLVEAIVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEIENKVHSFSVSDSSHPLKEQIYSVLEQLAGQMEEDASLFIAQR* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0159 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Vvi3g0159 612 MobiDBLite consensus disorder prediction 1 15 - -
Vvi3g0159 612 Gene3D Tetratricopeptide repeat domain 444 609 IPR011990 GO:0005515
Vvi3g0159 612 SUPERFAMILY TPR-like 30 284 IPR011990 GO:0005515
Vvi3g0159 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Vvi3g0159 612 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 33 143 IPR046960 GO:0003723|GO:0009451
Vvi3g0159 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Vvi3g0159 612 FunFam Pentatricopeptide repeat-containing protein At4g14050, mitochondrial 212 341 - -
Vvi3g0159 612 SUPERFAMILY TPR-like 103 548 IPR011990 GO:0005515
Vvi3g0159 612 Pfam E motif 507 569 IPR046848 -
Vvi3g0159 612 Gene3D Tetratricopeptide repeat domain 26 183 IPR011990 GO:0005515
Vvi3g0159 612 MobiDBLite consensus disorder prediction 1 21 - -
Vvi3g0159 612 FunFam Pentatricopeptide repeat-containing protein At2g21090 27 183 - -
Vvi3g0159 612 Pfam PPR repeat family 287 335 IPR002885 -
Vvi3g0159 612 Pfam PPR repeat family 390 437 IPR002885 -
Vvi3g0159 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 256 IPR002885 -
Vvi3g0159 612 FunFam Pentatricopeptide (PPR) repeat-containing protein 453 609 - -
Vvi3g0159 612 Pfam PPR repeat 127 156 IPR002885 -
Vvi3g0159 612 Pfam PPR repeat 99 125 IPR002885 -
Vvi3g0159 612 Pfam PPR repeat 465 489 IPR002885 -
Vvi3g0159 612 Pfam PPR repeat 231 256 IPR002885 -
Vvi3g0159 612 Pfam PPR repeat 362 385 IPR002885 -
Vvi3g0159 612 Pfam PPR repeat 158 188 IPR002885 -
Vvi3g0159 612 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 342 452 - -
Vvi3g0159 612 NCBIfam pentatricopeptide repeat 232 258 IPR002885 -
Vvi3g0159 612 NCBIfam pentatricopeptide repeat 392 425 IPR002885 -
Vvi3g0159 612 NCBIfam pentatricopeptide repeat 127 158 IPR002885 -
Vvi3g0159 612 NCBIfam pentatricopeptide repeat 290 323 IPR002885 -
Vvi3g0159 612 NCBIfam pentatricopeptide repeat 99 126 IPR002885 -
Vvi3g0159 612 NCBIfam pentatricopeptide repeat 260 287 IPR002885 -
Vvi3g0159 612 NCBIfam pentatricopeptide repeat 158 191 IPR002885 -
Vvi3g0159 612 Gene3D Tetratricopeptide repeat domain 342 443 IPR011990 GO:0005515
Vvi3g0159 612 Gene3D Tetratricopeptide repeat domain 193 341 IPR011990 GO:0005515
Vvi3g0159 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 287 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0159 Vvi-Chr3 1436852 1438690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0159 42 602 Glycoside Hydrolase AT3G49170 32.327 2.15e-105 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0159 - - vvi:100252156 1212.98