Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0158 ATGGAAAATGGGGTGGAAGCTATTGATATAAGCCATTTGGGGGAGATGAAGGGCGTGGATGATAGGGTTTTTGAGGAGAGAGTCGGAGAGGGTGTAGTGTCTGGGTCGGATGAGTCGAAGGATTCGGAAGGGGATGAGATTTTTGAGGAGGCGGTGGATCATCCAATGAAATTGGAATCGGGAAATGTTGTTGTAGATGAAGATGGGGATGGTAAAGTAATTGATGATTCAGAGTCAGTGGGGATTGACGGGAATTTGAATGTAGGGCATGAGGGGGAGACGTTTGAAGAGGCAATTGGGGTTTCTGGTGAAGTTAGGAATAGTGAGCAGGCTGTGGCGGGAGGTGTTGAAGCGGAAGTGGAAGGTTTAGTGGATAGGGAGGGTGTTGATGGGGTTGGGAAGGTAAACAACATTGATCAGGAAAGTATTTCCAAGGAAGTGGTGACAGATGATTTGACTGGGTTGGTGGATAGTGAAGAAGATAAGGGGAAGGAGGTGTCTGATGCAGGTATGGATGGAGGGATGGACCTTTTGAAGGATGGGAATAAGGTGGATGAGGTGTTTAGTGTGGTACTTGAGAAGTCTGAAAACAAGGATTCAGATGATTTGAATTTGGAGGCAAGGCCGGCTTATGAAAACTCTGAAAATGGAGAATCCAATAAGGTGGGTAAAAATGGCATTGATTCTGATCATGAGCATGAAGCCAATGGAGGGTTTCTGCATGAAGATAATAAAAGTGAGGACTTGAAGACGAGCACCTTGAATACTGAACATCAAGATGGTGAGAGCGGGGAGCCAAAAAACACTTCATCTGGCGTCTCTAAGGGGGAAAACCAGAAGGAAGATCAACCTGTCTTAGACATGGAATGTAAAAATGAGGAGAGTGGAGAGCTAAAAGGTGCTTCATCTAATGCTGAATATGTGGATGGTAAGTATCAAGAAGCAAATGATAGTTTGACTAGCTTGGATGCGGATCATCAAGATGATAACAATGTGGAATTGAGGGTTAGCCTTGGTTCAAGGCATGGAGAGGATAAGGGTGAGGAACAGGGGGAAACTTTGGCTAACTTAGTTACAGAACATCAAGATAGCCAGAGTAGGGAGCCGGAAGAGAGTCCTGTGAGGTGGGAATCAGAGCATCACGGTGAAAGTGCTGAACCAAAAGTCATTTCAGCTAATATGTACACTCCTGTGGATGAAGGGGTTTCCGCTTCAGGGACAGGAAGGTCACCTTCTGTAGAAGATTCTGCTATTGAAAAGAGTGAGATGGAGCAATGTGCCATAGAAGATTCTACTATTGAGAAGAGTGAGACAAAGCAAGGTGTCACATCTGAATTGGCAGCAGCCGATAATATAAGTCCTCAGCCGGAGCGTGCTGTGGAAAATGTAGCTGAAGTTAAAAACAAATATGTTGTGTTTGAGGAGCAGGAGACAAAAGAACCAAACATGGAGAAGGAGGATCAAAAAATTCAAGGGAATAGGGAACGAGAAATTCGTCCCGCAGAACAGGTTGCTTCATCATCTGGAAGATCTTCAAATCCTGGTCCTCCTCCTGCTCATCCTGCTGGCCTTGGGCGTGCTGCCCCGCTGTTGGAACCTGCTTCGCGTGTGGTGCAGCAGCCTCGAGTGAATGGAACCACATCCCAGGTACAAGCTCAACTCATTGAAGATGCTGGAAATGGGGAGGCTGAGGAAAATGATGAGACCCGTGAAAAACTCCAGATGATACGGGTGAAGTTTTTGCGGCTTGCTCATAGGCTTGGGCAGACTCCCCATAACGTTGTCGTGGCTCAAGTCTTGTACAGACTTGGATTGGCTGAACAGCTACGAGGGAGGAATGGGGGCCGTGTTGGTGCCTTCAGCTTTGACCGTGCTAGTGCCATGGCTGAGCAGCTTGAGGCAGCAGGGCAAGAGCCCCTCGATTTCTCTTGCACAATCATGGTTCTTGGAAAGACAGGAGTGGGTAAAAGTGCAACTATCAACTCAATATTTGATGAAGTGAAGTTTAGTACTGATGCTTTTCAGGTGGGTACAAAGAAGGTTCAGGATGTTGTGGGAACAGTTCAGGGAATTAAGGTAAGGGTCATTGACACTCCGGGCCTTCTACCATCCTGGTCAGACCAACGCCAGAATGAGAAGATCCTCCACTCTGTTAAAAGGTTTATCAAGAAAACCCCTCCAGATATTGTTCTGTATCTTGATAGGTTGGACATGCAGAGCAGGGATTTTGGTGACATGCCGCTGTTGCGCACAATAACTGAAATATTTGGACCATCAATATGGTTCAATGCAATTGTGGTTCTTACTCATGCAGCATCTGCTCCACCTGATGGCCCAAACGGTACTGCTTCAAGTTATGATATGTTTGTCACTCAGAGGTCTCATGTTGTCCAGCAAGCAATTCGTCAGGCAGCTGGGGATATGCGGCTCATGAACCCTGTGTCCTTGGTAGAGAACCACTCTGCATGCAGAACAAATAGGGCCGGGCAGAGAGTTTTACCAAATGGTCAGATTTGGAAGCCTCATTTGTTATTGCTCTCCTTTGCGTCAAAGATTTTGGCTGAAGCAAACACGCTTCTAAAGTTGCAAGATAGTCCACCTGGAAAGCCTTTTACAACACGATCAAGATCACCTCCTTTACCCTTCCTTCTCTCATCTCTTCTCCAATCAAGACCACAGGTAAGACTGCCAGAGGAGCAGGTTGGTGATGAGGACACTTTAGATGAGGATTTGGATGACTCGTCTGATTCAGATGATGAATCAGAATATGACGAATTGCCACCATTTAGACGATTGACAAAAGCCCAGCTGTCAAAGCTTACTAGAGCTCAGAAGAAGGCTTATTATGATGAGCTGGAATATAGGGAAAAACTTTTTATGAAGAAACAGTTGAAAGAAGAGAAAGAGCGACGGAAGATGATGAAGAAAATGGCAGCTTCTTCTAAGGATTTACCAAGTGACTACAGCGAGAACGCAGAAGAAGAAAGTGGTGGTGCTGCATCTGTGCCAGTTCCCATGCCAGATTGGGCCTTGCCTGCTTCTTTTGATTCTGATAATCCAACTCACCGTTATCGATATCTTGATTCATCCAACCAGTGGCTTGTGAGGCCTGTTCTGGAAACTCATGGTTGGGATCACGACGTTGGTTATGAAGGCATAAATGTGGAAAGAGTGTTTGCTATTAAGGACAAGATACCTGTTTCTTTTTCAGGCCAGGTTACAAAGGATAAAAAGGATGCCAATCTCCAAATGGAAATAGCCAGTTCAGTTAAGCATGGGGAAGGAAAAGCAACTTCTGTAGGTTTTGATATGCAGACGGTTGGAAAGGACATGGCATATACTCTGCGCAGTGAGACAAGATTTTGTAACTTTAGGAAAAATAAGGCAACAGCTGGTCTTTCTATTACTGCCCTGGGTGATGCCATAACAGCTGGATTAAAACTTGAAGACAAATTGATTGTTAACAAACGGATCCGGCTGGTTATGACTGGTGGTGCCATGACTGGCCGTGGTGATGTTGCTTATGGTGGTAGCTTGGAGGCCACCCTAAGAGATAAAGATCATCCTCTGGGTCGTTCGCTATCAACTCTTGGGCTCTCCATCATGGATTGGCATGGAGATCTTGCTATTGGATGCAACATACAGTCCCAGATCCCTATTGGCAGGTTTACAAACATGATTGGTCGTGTCAATTTGAATAATAGGGGAGCGGGGCAGGTCAGCATACGCTTGAATAGCTCAGAACAGCTTCAAATAGCTTTAATTGGTCTGGTTCCTCTACTCCGGAAGCTACTTGGTTATTCTCAACAAGGACAGTTTGGACAATGA 3828 0.4561 MENGVEAIDISHLGEMKGVDDRVFEERVGEGVVSGSDESKDSEGDEIFEEAVDHPMKLESGNVVVDEDGDGKVIDDSESVGIDGNLNVGHEGETFEEAIGVSGEVRNSEQAVAGGVEAEVEGLVDREGVDGVGKVNNIDQESISKEVVTDDLTGLVDSEEDKGKEVSDAGMDGGMDLLKDGNKVDEVFSVVLEKSENKDSDDLNLEARPAYENSENGESNKVGKNGIDSDHEHEANGGFLHEDNKSEDLKTSTLNTEHQDGESGEPKNTSSGVSKGENQKEDQPVLDMECKNEESGELKGASSNAEYVDGKYQEANDSLTSLDADHQDDNNVELRVSLGSRHGEDKGEEQGETLANLVTEHQDSQSREPEESPVRWESEHHGESAEPKVISANMYTPVDEGVSASGTGRSPSVEDSAIEKSEMEQCAIEDSTIEKSETKQGVTSELAAADNISPQPERAVENVAEVKNKYVVFEEQETKEPNMEKEDQKIQGNREREIRPAEQVASSSGRSSNPGPPPAHPAGLGRAAPLLEPASRVVQQPRVNGTTSQVQAQLIEDAGNGEAEENDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFSTDAFQVGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQSRDFGDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQIWKPHLLLLSFASKILAEANTLLKLQDSPPGKPFTTRSRSPPLPFLLSSLLQSRPQVRLPEEQVGDEDTLDEDLDDSSDSDDESEYDELPPFRRLTKAQLSKLTRAQKKAYYDELEYREKLFMKKQLKEEKERRKMMKKMAASSKDLPSDYSENAEEESGGAASVPVPMPDWALPASFDSDNPTHRYRYLDSSNQWLVRPVLETHGWDHDVGYEGINVERVFAIKDKIPVSFSGQVTKDKKDANLQMEIASSVKHGEGKATSVGFDMQTVGKDMAYTLRSETRFCNFRKNKATAGLSITALGDAITAGLKLEDKLIVNKRIRLVMTGGAMTGRGDVAYGGSLEATLRDKDHPLGRSLSTLGLSIMDWHGDLAIGCNIQSQIPIGRFTNMIGRVNLNNRGAGQVSIRLNSSEQLQIALIGLVPLLRKLLGYSQQGQFGQ* 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0158 1275 FunFam Translocase of chloroplast 120, chloroplastic 616 863 - -
Vvi3g0158 1275 MobiDBLite consensus disorder prediction 415 436 - -
Vvi3g0158 1275 MobiDBLite consensus disorder prediction 902 923 - -
Vvi3g0158 1275 NCBIfam chloroplast protein import component Toc86/159, G and M domains 521 1267 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Vvi3g0158 1275 CDD Toc34_like 616 861 - -
Vvi3g0158 1275 Gene3D - 613 861 IPR027417 -
Vvi3g0158 1275 MobiDBLite consensus disorder prediction 224 264 - -
Vvi3g0158 1275 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 643 1191 IPR045058 -
Vvi3g0158 1275 MobiDBLite consensus disorder prediction 196 460 - -
Vvi3g0158 1275 MobiDBLite consensus disorder prediction 363 386 - -
Vvi3g0158 1275 Pfam Translocase of chloroplast 159/132, membrane anchor domain 1002 1265 IPR024283 -
Vvi3g0158 1275 MobiDBLite consensus disorder prediction 280 296 - -
Vvi3g0158 1275 MobiDBLite consensus disorder prediction 473 526 - -
Vvi3g0158 1275 MobiDBLite consensus disorder prediction 970 1005 - -
Vvi3g0158 1275 Pfam AIG1 family 644 777 IPR006703 GO:0005525
Vvi3g0158 1275 MobiDBLite consensus disorder prediction 156 178 - -
Vvi3g0158 1275 MobiDBLite consensus disorder prediction 893 928 - -
Vvi3g0158 1275 MobiDBLite consensus disorder prediction 398 414 - -
Vvi3g0158 1275 MobiDBLite consensus disorder prediction 473 501 - -
Vvi3g0158 1275 ProSiteProfiles AIG1-type G domain profile. 641 870 IPR006703 GO:0005525
Vvi3g0158 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 637 778 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0158 Vvi-Chr3 1425198 1429025 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0158 - - vvi:100262391 2347.78