Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0157 ATGGAGAAGCTACCTCTTTTCCTAATCCTTTTCTCACTAGCCATATCCATGGCCATGGCCGACAGCAATGAAGTTGATGAATGGTTTGGTAACCTCCAGCATGCAAAGGAGAGGACCACCCGTCTCCACTTCTACTTCCACGACACAACCTCAGGCAAGAACCCGAGCGCAAGGCGCGTAGCTCAAGCCCCTTCAACTAACAAATCCCCCACCTTCTTCGGCCTCATAAACATGATGGACGACCCACTCACGGAAGGGCCCGAGGCGACTTCCAAGCTAGTGGGTCGTGGGCAGGGGCTGTATGCCTCATCTGGGTTGGATGAGTTGAGCCTCCTTATGGCCTGGAACGTAATCTTCAAGAGTGGGGACTACAATGGCAGCTCTCTAACCATTCTCGGTCGAAACCCCACTACCCATCCCCTCCGTGAGATGTCCATTGTGGGTGGCACTGGTGTTTTCCGAATGGCCCGTGGAGTAGTGACTCTCAAGACATATTTCTTTAATTCTAGTGCCGGTGTAGCTGTCGTTCAAGTTGATGTTGTGGCTATTCACTACTGA 558 0.5197 MEKLPLFLILFSLAISMAMADSNEVDEWFGNLQHAKERTTRLHFYFHDTTSGKNPSARRVAQAPSTNKSPTFFGLINMMDDPLTEGPEATSKLVGRGQGLYASSGLDELSLLMAWNVIFKSGDYNGSSLTILGRNPTTHPLREMSIVGGTGVFRMARGVVTLKTYFFNSSAGVAVVQVDVVAIHY* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0157 185 Pfam Dirigent-like protein 39 181 IPR004265 -
Vvi3g0157 185 Gene3D - 29 175 IPR044859 -
Vvi3g0157 185 PANTHER NUCLEOPORIN-RELATED 27 180 IPR004265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0157 Vvi-Chr3 1415779 1416336 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0157 - - vvi:100264136 347.051