Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0156 ATGGCAAAGCTAGCTCTGGCTCTGCTGCTCATCTCCATGGCCATGGCCATGCCATGGGCTCAACCCCAAGACCTCAAGTGGGCCAAGAGGCTCGACTCCGGCGGCCAACCCACCACCAATCTCCAGTTCTACTTCCACGACACACTCAGCGGCAAAACCCCAACTGCAGTTCGCGTGGCTCAGGCCTCACAAACTGACAAGTCTCCAACTCTCTTTGGAGCCTTGTTAATGGCGGACGACCCCCTCACAGAAGGACCCGACCTGAGTTCCAAACTCGTGGGTCGCGCCCAGGGGCTGTACGGGTCGGCGAGTCAGGAGGGGTTTGGTCTGATAATGGCTCTGAGTTATGGGTTCTGCGATGGAATCTACAATGGCAGCTCCATTAGCGTTCTTGGGTTGAACCAGGCTCTGAACCCGGTCCGGGAGCTGCCGGTGGTGGGCGGAACCGGGGTCTTCCGGATGGCTCGTGGATTTGCGGAGGCGAGGACTCACTGGTTTGATCCTGCCACGGGTGACGCTATCGTTGCCTACAATGTGACCGTATTTCATTATTGA 555 0.5784 MAKLALALLLISMAMAMPWAQPQDLKWAKRLDSGGQPTTNLQFYFHDTLSGKTPTAVRVAQASQTDKSPTLFGALLMADDPLTEGPDLSSKLVGRAQGLYGSASQEGFGLIMALSYGFCDGIYNGSSISVLGLNQALNPVRELPVVGGTGVFRMARGFAEARTHWFDPATGDAIVAYNVTVFHY* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0156 184 PANTHER NUCLEOPORIN-RELATED 28 179 IPR004265 -
Vvi3g0156 184 Gene3D - 28 173 IPR044859 -
Vvi3g0156 184 Pfam Dirigent-like protein 38 182 IPR004265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0156 Vvi-Chr3 1412138 1412692 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0156 - - vvi:100241853 360.918