Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0155 ATGTCTACCCATTCCCATTTCTTGATACTTCTGCTAGCTTTGCTGTCTCTTGGATCGTACACCATCAGAGGCCAAGGCCATGGATTCTATATAAAAGAAGCAAGTGTGGATGATCTTCACACTGCTTTCCTTCAAAACAAGCTCACCTCAAGACAACTGGTTGAGTTTTACCTTGGCGAGATCTTTAGACTGAGTCCACTTCTTCATGGGGTAATAGAGGTGAACCCGGATGCTCTCTACCAAGCTGATAAGGCAGACAGGGAGCGGAAGGCTAAGTCCCCTGTGTCGCGGTCTGTTCTTCATGGTATTCCTATTTTGCTCAAGGATAACATTGGAACCAAGGATAAGCTAAACACGACTGCAGGGTCATTTGCACTGCTAAAATCAGTGGTACCTCGAGATGCAGGTGTGGTGATGAAGTTGAGGAAGGCTGGGGCTATCATACTGGGAAAGGCTAGCCTGAGTGAGTGGGCTAATTTTCGGTCCCTAAATGCACCACCTGGTTGGAGTGCCAGAGGTGGCCAAGGCCTGAACCCTTATGTTCTATCAGCAACGCCTTGTGGCTCTAGCAGTGGTTCAGCTATATCAGTAGCAGCAAATTTGGTAGCAGTGTCACTGGGGACCGAAACCGATGGTTCCATCCTATGTCCAGCCAGTTTTAATTCAGTAGTGGGCATCAAACCAACCGTTGGTCTTACTAGCCGAGCTGGGGTTGTTCCCGTCTCTCCTAGACAGGACACCATTGGGCCTATCTGTAGGACAGTGTTGGATGCGGTTCAGGTACTGGATGCCATTGTAGGTTTCGACTACAACGATGCTGAAGCAACCAGAGAAGCATCAAAGTACATACCATATGGTGGGTATAAGCAATTTCTCAAGCCATATGGGCTCAAAGGGAAGAGACTGGGAATAGTGAGGAATCCTTTCTTCACTACTGGCAGTGGAGCTGCCCTTACTCAAGCTTTTGAGCACCATTTCTACACATTAAGGCAAGAAGGAGCAGTTTTGGTAGATGATTTGGAAATAGCCAATATCAATGTTATCTTAAATGCCACTTCAAGTGGAGAAGCAACAGCATTGCTGGCTGAGTTCAAGCTATCATTGAATTCCTATCTAAAAGATCTGGTGGCATCTCCAGTCCGATCTCTGGCAGATGTCATAGCCTTCAACCAGAAATTCTCAGATTTGGAAATGATCAAGGAGTTTGGACAAGACATCTTTCTGGCAGCCCAGGCCACAAATGGAATTGGTGACGTAGAGAAGAAAGCTTTGTCGAATTTAGCAAGACTGACTAGGGATGGATTCGAGAAATTGATGATAGAGAATAAGCTAGATGCATTGGTGACTCCTGGTTCAGATGTTGCTCCAGTTCTTGCCATAGGGGGGTTCCCAGGAATTAGTGTCCCTGCTGGATATGATTACAAAGGGGTGCCCTTTGGCATTTGTTTTGGGGGCCTAAAGGGCTCAGAGCCAAAGCTGATCGAGATCGCATATGGCTTTGAGCAAGCTACTAAGATTAGGAAGCCTCCTTCATTTAAACCTTGA 1545 0.4654 MSTHSHFLILLLALLSLGSYTIRGQGHGFYIKEASVDDLHTAFLQNKLTSRQLVEFYLGEIFRLSPLLHGVIEVNPDALYQADKADRERKAKSPVSRSVLHGIPILLKDNIGTKDKLNTTAGSFALLKSVVPRDAGVVMKLRKAGAIILGKASLSEWANFRSLNAPPGWSARGGQGLNPYVLSATPCGSSSGSAISVAANLVAVSLGTETDGSILCPASFNSVVGIKPTVGLTSRAGVVPVSPRQDTIGPICRTVLDAVQVLDAIVGFDYNDAEATREASKYIPYGGYKQFLKPYGLKGKRLGIVRNPFFTTGSGAALTQAFEHHFYTLRQEGAVLVDDLEIANINVILNATSSGEATALLAEFKLSLNSYLKDLVASPVRSLADVIAFNQKFSDLEMIKEFGQDIFLAAQATNGIGDVEKKALSNLARLTRDGFEKLMIENKLDALVTPGSDVAPVLAIGGFPGISVPAGYDYKGVPFGICFGGLKGSEPKLIEIAYGFEQATKIRKPPSFKP* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0155 514 PANTHER AMIDASE 11 514 - -
Vvi3g0155 514 Gene3D Amidase signature (AS) domain 21 512 IPR036928 -
Vvi3g0155 514 Pfam Amidase 53 456 IPR023631 -
Vvi3g0155 514 SUPERFAMILY Amidase signature (AS) enzymes 32 510 IPR036928 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0155 Vvi-Chr3 1406571 1408542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0155 35 285 Acyl Lipid Metabolism Gene Families AT5G07360 31.746 1.11e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0155 K01426 - vvi:100245248 985.326