Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0154 ATGGCTTTCCAACAAAACAAACTCACCTCACGGAAGCTTGTTAGGTTCTACCTGGGTGAAATTCACAAACTCAACCCAATTCTTCGTGGGGTGATAGAGGTGAACCCAGATGCACTCCTCCAAGCAGATAAGGCTGACAAAGAGAAGAAGGCTAAGTCACTTCGGTCGCTGGAGGGGCTGCATGGCATTCCTATTCTGCTTAAGGATAATATTGCAACCAAGGACAAGATGAACACAACAGCTGGGTCATTTGCACTGCTTAAATCGGTGGTGCCAAGGGATGCAGGCGTGGTGAGGAAGTTGAGGAAGGCTGGGGCTATCATACTGGGAAAGGCTAGCCTGAGTGAGTGGACTGGTTTGCGCTTTGTTTTTCCTTATGGCTGGTGTGCCAGAACTGGCCAAGGTCGGAACCCTTATGTTCTGTCAGCAACTCCTTGTGGGTCAAGTAGTGGATCAGCTATATCAGTAGCAGCAAATTTAGCAGCAGTTTCATTAGGGACGGAAACTATGGGATCCATCTTATGTCCATCCCATTTTAATTCAGTAGTGGGCATCAAACCAACAGTAGGTCTCACCAGCCGAGCTGGGGTGGTTCCAATCTCTCCCAGGCAGGACACTGTTGGGCCCATCTGCAGGACAGTCTCCGACGCTGTAGAGGTACTGGATGTCATTGTAGGTTTTGACAAGAGGGATAAAGCAACCAGGACAGCATCCAAGTACATACCAAGGGGTGGCTACAAGCAATTTCTCAATGCAAATGGGCTCAAGGGGAAGAGATTAGGAATAGTGAGGAATCCTCCCTATATGTTTGAGAATGTCTCTGTCCAGCCTCAAGTTTTTGAGCATCATTTCCACACACTAAGGCAAGGAGGTGCGGTTTTGGTAGACCACCTGAAAATAGCAAACATCGATGTTTTCTTTGGCTCCACCGGAGTAGAAGCACTAGAGGCTGAGTTAAAAATATCCTTGAATGCTTACCTGAAAGAGCTGGTAGCATCCCCAGTAAGAACTTTGGCTGATGTGATAGCCTTCAACAACAAATTCTCACATTTAGAAAAGGTCAAGGAGTATGGACAAGATCTGTTTCTGCAAGCCCAAGCCACAAAAGGAATAAACAAGAAAACTTTGTTAAAATTAGCAAGATTTTCAAGGAATGGATTCGAGAAGTTGATGAAGAAGCATAAGCTGGACGCAATGGTAGCTCCTACTGCAGATATTATTCATGTTCTCGCCATTGGAGGATTCCCAGGAATTGATGTTCCAGCTGGATATGATGGAAAAGGAGTACCATTTGGCATTTGTTTTGGGGGCCTAAAGGGCTCTGAGCCAAAGCTGATCGAGATTGCATATAGCTTCGAGCAGGCAACTAAGATTAGGAAGCCACCTTCATTTAAACCTTGA 1401 0.4597 MAFQQNKLTSRKLVRFYLGEIHKLNPILRGVIEVNPDALLQADKADKEKKAKSLRSLEGLHGIPILLKDNIATKDKMNTTAGSFALLKSVVPRDAGVVRKLRKAGAIILGKASLSEWTGLRFVFPYGWCARTGQGRNPYVLSATPCGSSSGSAISVAANLAAVSLGTETMGSILCPSHFNSVVGIKPTVGLTSRAGVVPISPRQDTVGPICRTVSDAVEVLDVIVGFDKRDKATRTASKYIPRGGYKQFLNANGLKGKRLGIVRNPPYMFENVSVQPQVFEHHFHTLRQGGAVLVDHLKIANIDVFFGSTGVEALEAELKISLNAYLKELVASPVRTLADVIAFNNKFSHLEKVKEYGQDLFLQAQATKGINKKTLLKLARFSRNGFEKLMKKHKLDAMVAPTADIIHVLAIGGFPGIDVPAGYDGKGVPFGICFGGLKGSEPKLIEIAYSFEQATKIRKPPSFKP* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0154 466 Pfam Amidase 13 404 IPR023631 -
Vvi3g0154 466 SUPERFAMILY Amidase signature (AS) enzymes 3 463 IPR036928 -
Vvi3g0154 466 Gene3D Amidase signature (AS) domain 1 464 IPR036928 -
Vvi3g0154 466 PANTHER AMIDASE 2 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0154 Vvi-Chr3 1402236 1405517 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0154 3 235 Acyl Lipid Metabolism Gene Families AT5G07360 32.906 2.44e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0154 K01426 - vvi:100250374 892.493