Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0150 ATGATTGAAACTCAGTACAATGCAAAGGTTCGGGTTCTGCGTAGTGATAATGGTGGAGAATATCAAAGTTCTGATCTTCAAAAGTATTTGGAAGGACATGACATCATTCATCAGACTACTTGTTCCAATACACCCCAGAAAAATGGAGTCGCTGAACGAAAAAATCGACACTTGTTAGAGGTTGTTCGTGTTTCCTTGATATTACCACATCGTCATAATAGAGGTATTCCTAAACCCACATATGAACCTGAATTGTCTACTATAGTCGAATATCCCATGAGCAACTATGTGTCTACCCATCGTTTGTCTGAATCAAATAAGCCATTTGTAAATCAATTATCTACTGTATCTATTCCTAACAGTGTGCAGGAAGCCTTAGCTGATCCAAGGTGGAAAGCAGCCATGAATGAAGAGATGAAATCATTGCAGAAGAATGAAACATGGGAACTCGTAGAATGTCTACCAGGAAAGAAGCCAGTTGGGTGTCGTTGGATCTATACTGTGAAGTACAAGGTAGATGGGTCATATGCGTTGTTGGGGGCGAAGGTGGGTGGAGACGCGGCGGTGGTGGAGAGATTGAGGAAGGCAGGGGCGGTGATACTGGGAAAGGCTAGTATGAGTGAATGGTATCAGTTTCGTTCTTTGAAAACTCGAAACGGCTGGTGTCCAAGGAGTGGACAGGGTGTGAATCCATATGTACCATCGGGAGATCCATGCGAGTCAAACAGCGGATCTGCAATATCTGTAGCGGCCAACATGGTGGCTGTCTCGCTTGGGACTGAGACTGATGGTTCCATCATCTGCCCAGCCGATGTGAACTCCGTTGTTGGGTTTAAACCCACTATTGGACTCACCAGTCGGGTAGGTGTCATCCCAATTTCACCCCGACAAGACAGTGTCGGGCCTATAAATTATGAAAGTAGAGCTTGTTCTATATATAGCGTTGATCAGATGTTTCTCTACCACAGACCTATATGCTGGAGTGTGCTGGACGCAGTTTATGTGCTTGATGCTATAGTGGGTTTTGATCCTAGAGACGGTGAGGCAACAAAAGAAGCATCCAAGTTCATACCTGTTGGTGGCTACAAACAATTTCTCAACAAAGATGGGATTGCAGGAAAGAGATTGGGTGTTGTGAGGAATCCATTTTCTGGATTTTACAACCGATCCACAGCTATTTCAGCCTTTGAAGCTCATCTCACCGTATTAAGGCAAAGAGGTGCAATTTTAGTGGACAATTTGGAAATAGAAAATGTTGATATCATATTGAACCCCTATGAAAGTGGTGAATCAACGGCCTTGTTGGCTGAGTTCAAGCTCAACATAAATGAATACCTGAAAGAGCTCACCCATTCTCCAGTGAGGTCCCTAGCAGGCATAATTGCCTTCAACTTGAACAACTCCGATCTGGAAAAGACTGATGAATATGGCCAGGAAGTCTTTATCGCAGCAGAGATGACAAATGGGATTGGGAAGCAAGAGAGGATGGCAATGGAAATGATGGCAAATCTGTCTCAGGATGGGTTTGAGAAACTGATGATGGAGAATAAGCTTGATGCAACGGTGGCACTGGGTTCAGGCATGGCCACTGTACTGGCCATTGGAGGTTACCCCGGAGTTAGTGTTCCAGCTGGGTATGATGGAGATGGAATGCCCTTTGGCATATGTTTTGGAGGACTGAAGGGGATGGAGCCAAAGCTTATTGAAGTTGCTTACGGATTTGAACAAGCCACAAAGATTCGGAGACCTCCTACTTCCCCTAATAACTTATTGTGTCCTAATGAGCCATTGTAA 1794 0.4448 MIETQYNAKVRVLRSDNGGEYQSSDLQKYLEGHDIIHQTTCSNTPQKNGVAERKNRHLLEVVRVSLILPHRHNRGIPKPTYEPELSTIVEYPMSNYVSTHRLSESNKPFVNQLSTVSIPNSVQEALADPRWKAAMNEEMKSLQKNETWELVECLPGKKPVGCRWIYTVKYKVDGSYALLGAKVGGDAAVVERLRKAGAVILGKASMSEWYQFRSLKTRNGWCPRSGQGVNPYVPSGDPCESNSGSAISVAANMVAVSLGTETDGSIICPADVNSVVGFKPTIGLTSRVGVIPISPRQDSVGPINYESRACSIYSVDQMFLYHRPICWSVLDAVYVLDAIVGFDPRDGEATKEASKFIPVGGYKQFLNKDGIAGKRLGVVRNPFSGFYNRSTAISAFEAHLTVLRQRGAILVDNLEIENVDIILNPYESGESTALLAEFKLNINEYLKELTHSPVRSLAGIIAFNLNNSDLEKTDEYGQEVFIAAEMTNGIGKQERMAMEMMANLSQDGFEKLMMENKLDATVALGSGMATVLAIGGYPGVSVPAGYDGDGMPFGICFGGLKGMEPKLIEVAYGFEQATKIRRPPTSPNNLLCPNEPL* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0150 597 ProSiteProfiles Integrase catalytic domain profile. 1 63 IPR001584 GO:0015074
Vvi3g0150 597 SUPERFAMILY Amidase signature (AS) enzymes 174 584 IPR036928 -
Vvi3g0150 597 Pfam Amidase 182 565 IPR023631 -
Vvi3g0150 597 Gene3D - 1 77 IPR036397 GO:0003676
Vvi3g0150 597 SUPERFAMILY Ribonuclease H-like 1 69 IPR012337 -
Vvi3g0150 597 PANTHER AMIDASE 171 587 - -
Vvi3g0150 597 Gene3D Amidase signature (AS) domain 158 586 IPR036928 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0150 Vvi-Chr3 1374043 1381233 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0150 151 594 Acyl Lipid Metabolism Gene Families AT5G64440 23.871 2.48e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0150 K01426 - vvi:100265841 789.645