Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0144 ATGGTGGAGATCATTTGCACTTTGATAAGAAATTTATCCCCTAATTGGAGCAGTTCTTCAATGATGGCCATGGGTGTCAGCATTTTAGAAAAAATGTTAAAATGTTCTCCATCTCATGTTACAGCCGTGGCTCTGAAGGCAAACATATTTGATTTGGCTTCTAAGACAAGTACATTTGAAACTCTCTTTACTGGTTCAACAAGTGGATCATGGTTGCTATCTGGGAAACTTGCAAAAATGCTCTTAATTGACTGTGAGCAAAATGACAACTGCTGCCAGTTGACAATTTCAGTGCTGGATTTTACCAAACAGCTTGTGGAAACTGGAGAAGAAAATGATTTTGCCCTGGCTCTTGTTGTTTTCTCCCTCCAGTATGTTTTAGTCAATCATGAGTACTGGAAATACAAGGTGAAGCATGTTCGCTGGAAAGTAACATTGAAGGTGCTTGAAGTAATGAAAAAATGCATCATGACAATCCCATACTCTCAGAAAGTGGGTGAGATTGTCCAGGATATTTTACTCCGTGATTCTTCTATCCACAATGCACTCTTTCGAATTATTTGTACAACTAAACAGGCCTTGGAGAAACTCTACATGAGCCGTCTTTGTGAAGCAATGGAGATTGAAGGATTAGAACTTGCAATATGTTCTGTTTTTGACATTCTTTTCACTATGCTATCCAAGCTTTCAAAGGATATTACATCAAGCCTGCCTGTTTTTGACCAAGCAGTGCTGTCAACTACAACCAAACCCATTTCTGTTATTGCAGCTGTGATATCCTTGATATCATACTTCCACAATCCTAGAATACAAGTGGGTGCTAGTAGAGTACTATCTATGTTATTCATTATAGCAGATTCTTCACAACCATATTTATTTGGGAATAGATGCTTTGGTTTGGATGATAAACAGATTACAGATTTAAGGCATTCTATTGATAAGATTCTAAGTGACCAGTCTTCTTGGAATGAAGATCTCTTTGTTGCTACAGTCAAATTGCTTACTTCTGCTGCACTTCATCAGCCTGCTTTTCTTGTTGCCATAATTGCTGCCAAAGACAATCTAGGTTTGAAGCAGCCAGTAAATGAAGCTTCCTTTGGAACACTGGGGTCTGTCAAACCAAGTTTGGTGGATGCACTCTTGCAAGTTATTGAAAGATCTGATGATCTTATCAATAGCAATCCCCGTTTACTACTGAATGTGCTTAACTTACTGAAAGCATTGTGGCAAGGGGCTGCTCAATATGCAGATATTTTGGAATGGCTGAAAAACTCTGAAAAGTTCTGGAAACTATTTTGCAACTCCATTTCTCTAATTGCTAGAATGAAAGCTCCCCTGCCTGAAAATCTTACTGAAATGGAGGCTCTAAGCTTGGCATACAAATACCAGTGTCAAACAGCTGTATTGGAAATAATGGCAGAAGACTTGTTCCTGCAGAAGAAGTTACTGCATGCTGAATTTCTTGTAAAACTTGCTGCTGAATCATCAAAGGAAAAGACAGGAACCACAGTTGGTTTGGAAAAATCAAGATCTGAAAATTTACACCATCTTAAGGATGTTTTGTCATCCTGGTGTGAGAATTCAGTGTTGGTTGACCTGATCAAGTCATATGCATCTTGTCAATATGACACTGAAATATATCTCCGTGCAAAGATTGCTGCCAGTTTATTCATTGTGCATGTGATGGGAAAATTAGCAACAGGTGATGCGGGGAGTTTGTCTGTCTCATTACTTGAAAAGCTACATAGTATGAATAAAAAGCTGGGCAATCAGCCTGCTTTCTCTGAATTGTTATCTCAATATTCCCAGCGGGGTTACAGTGAAGGGAAGGAGCTGAATATTTTAATACTCAGTGATCTTTATTATCATCTTCAAGGAGAGCTTAAAGGCCGTAAAATTGATCCTGGGCCATTCAAAGAACTTGCCCAGTATCTACTGGATTCACAATTTTTGCAAAATTATCGACATGAGTATGATGGTGACCTTTTTGCACCTGCTAAAGATGTTCACTTGTTTGACACCAGTCATTTACAAGCAGATTTAGGATTAGCTATGTGGGATCATTCACAGTGGAAAGCAACTAAAGAAATTGCAGAAACAATGTTGCTTTGCATGAAGGAAGCTAACTCAATGGTGTTGCTCACTGGATCAAAGCTTTGTTCATTGAAAGCATTGATAACCATCTTGACCATGTATGAAGAAGATTTAAGTGAGAGAAAGACTACAATAGGTGGGGCGATCCCTGAGCAACTCATTCTATCGTGCATAGATCATGTGTGCCAATGTTTCCATGGCACACTAGAATCATTAGCTCCAGTTCTCGATGCTCCTGAAGATATGCTTGATTTCCTTGCAGCCCAAGCTGAACTACTTCTCCGTCTCATTAGATTTGTAAACAAAAGTCTGCCTTTACCTGTTTGTGTACTTGTTTTAAAAACCTCAGGTCATGGCCTTAAAGTGTTGGGTAACTTTAAGCCATCTGTTCCTGAGGTTAGAACAACAATGAAGCTCTTACTCATGTTGCTTCTCTCATCACTTGAGTTCAGCTCTCTCAGTTCACTTTTAGGTGGGTTGTCAGATAAGAAATCTGTTGAAGACTTAGCTGAAGCATCTAGTGTGAGTTTGGGGCTATTACCTATTCTCTGCAACTGCATCGGAACTGCTGAGAATTGTGTCCTCTCCCTGACAACTATTGACTTAATACTGAAAGGCTTCTTGACACCTAACACTTGGTTCCCCATCATACAAGAACATCTCCAGTTGCAGCATATTGTTCTGAAACTTCAAGATAAAAGCTCTCTTGCTTCCATTCCCATAATTTTGAGATTTCTTTTGACCCTTGCACGTGTGAGAGGAGGTGCTGAGATGCTTCTTACTGCTGGCTTTTTCTCATCTCTGAGAGTGTTGTTTGCTGACTTATCAGCTGGTAGGCCATTTTCAGTTATTCAAAATGGTACAAGTCACTCCAACTCATCTGAGAATTTTGAAAAGCCTCAGCATGTTTGGGGTCTAGGCTTGGCTGTAGTCACAGCAATTATTCATTCTTTGGGAGGCAGTTCCTTGTGTGTCAATACTGTTGAGAATGTAATTCCTTACTTCTTCTCTGAGAAAGCTTATTTGATATCATATTATCTTAATGCACCAGACTTCCCATCTGATGATCATGACAAGAAAAGAGCTCGGGCTCAAAGGACAAGGACATCTCTTGCTGCTCTTAAGGAAACAGAGCATACTCTAATGTTAATGTGCGTGCTAGCAAAGCACTGGAACTCATGGGTTAAGGCTGTGAAAGAAATGGATACAGAGCTAAGGGAGAGAAGTATTCATCTTTTGGCCTTCATTAGCCGGGGAACTCAACGCCATGGAGAATCACCCAGCAGGATTCCACCTCTCTTGTGTCCTCCTATGCTCAAAGAGGATTTTGATTTTTACAAGAAACCAGCATTTGTTAACAGCCAAAATGGATGGTTTGCTCTTTCTCCTCGTGGTTGTTTATCAAAATCTAAGTTCTCATCTGTCTCAATCAAGTCAACTGCTCTTGTAGTCAAGGATCAATCATCTGAAAATTTAGATGTTTCTCAGACACACTTCTCAGATATAGTAGCCTTGCAGATCTATAGAATTACATTTCTTCTATTGAAATTTCTCTGTTTACAAGCTGAGGGTGCTGCTAGGAGGGCCGAGGAAGTGGGATTTGTAGATCTTGCTCATTTTCCTGAACTTCCAATGCCTGAGATTTTGCACGGCTTACAGGATCAAGCCATTGCCATTGTCACTGAACTCTGTGAGGCCAACAAATTAAAGAAGATCGAGCCTGAAGTCCAGAGCACATGCCTCTTATTACTGCAAATAATGGAAATGGCCTTGTACTTGGAACAATGCGTTTCACAGATTTGTGGAATCAGACCTGTTTTAGGACGCGTTGAGGATTTTTCCAAGGAAGTCGTCCTGTTAATTAGAGCAACGGAAGGACATTCCTTTTTGAAAGCAGCAGTAAAGTCCTTGAAGCAGATTATATCACTTGTGTATCCTGGACTATTACAAACTGAGGGCCTCTTGTGA 4062 0.4003 MVEIICTLIRNLSPNWSSSSMMAMGVSILEKMLKCSPSHVTAVALKANIFDLASKTSTFETLFTGSTSGSWLLSGKLAKMLLIDCEQNDNCCQLTISVLDFTKQLVETGEENDFALALVVFSLQYVLVNHEYWKYKVKHVRWKVTLKVLEVMKKCIMTIPYSQKVGEIVQDILLRDSSIHNALFRIICTTKQALEKLYMSRLCEAMEIEGLELAICSVFDILFTMLSKLSKDITSSLPVFDQAVLSTTTKPISVIAAVISLISYFHNPRIQVGASRVLSMLFIIADSSQPYLFGNRCFGLDDKQITDLRHSIDKILSDQSSWNEDLFVATVKLLTSAALHQPAFLVAIIAAKDNLGLKQPVNEASFGTLGSVKPSLVDALLQVIERSDDLINSNPRLLLNVLNLLKALWQGAAQYADILEWLKNSEKFWKLFCNSISLIARMKAPLPENLTEMEALSLAYKYQCQTAVLEIMAEDLFLQKKLLHAEFLVKLAAESSKEKTGTTVGLEKSRSENLHHLKDVLSSWCENSVLVDLIKSYASCQYDTEIYLRAKIAASLFIVHVMGKLATGDAGSLSVSLLEKLHSMNKKLGNQPAFSELLSQYSQRGYSEGKELNILILSDLYYHLQGELKGRKIDPGPFKELAQYLLDSQFLQNYRHEYDGDLFAPAKDVHLFDTSHLQADLGLAMWDHSQWKATKEIAETMLLCMKEANSMVLLTGSKLCSLKALITILTMYEEDLSERKTTIGGAIPEQLILSCIDHVCQCFHGTLESLAPVLDAPEDMLDFLAAQAELLLRLIRFVNKSLPLPVCVLVLKTSGHGLKVLGNFKPSVPEVRTTMKLLLMLLLSSLEFSSLSSLLGGLSDKKSVEDLAEASSVSLGLLPILCNCIGTAENCVLSLTTIDLILKGFLTPNTWFPIIQEHLQLQHIVLKLQDKSSLASIPIILRFLLTLARVRGGAEMLLTAGFFSSLRVLFADLSAGRPFSVIQNGTSHSNSSENFEKPQHVWGLGLAVVTAIIHSLGGSSLCVNTVENVIPYFFSEKAYLISYYLNAPDFPSDDHDKKRARAQRTRTSLAALKETEHTLMLMCVLAKHWNSWVKAVKEMDTELRERSIHLLAFISRGTQRHGESPSRIPPLLCPPMLKEDFDFYKKPAFVNSQNGWFALSPRGCLSKSKFSSVSIKSTALVVKDQSSENLDVSQTHFSDIVALQIYRITFLLLKFLCLQAEGAARRAEEVGFVDLAHFPELPMPEILHGLQDQAIAIVTELCEANKLKKIEPEVQSTCLLLLQIMEMALYLEQCVSQICGIRPVLGRVEDFSKEVVLLIRATEGHSFLKAAVKSLKQIISLVYPGLLQTEGLL* 1354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0144 1353 PANTHER NUCLEOPORIN NUP188 HOMOLOG 2 1348 IPR044840 GO:0017056
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0144 Vvi-Chr3 1333168 1346901 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0144 K14311 - vvi:100264071 2575.43