Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0133 ATGGCGGCAGTGACCTCAACATCACTCGCATCTCAATTGTCGACCCCCAAGGCCACAACTCCCTCCTATTCCTATTCCTCCGCCACTCAATTTTCAGGCCTCCGCCGATCCTTCTCCAACCTCGACCACTCTCCCCAGCCTTTCTTCTCTTCCAATCTCCGAATCTCCTCCTCTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAATTCTTTGTCGGAGGAAATTGGAAGTGTAATGGGACAAAAGACTCCATCAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCATTAACAGATCGGATTGAGATATCTGCTCAGAACTCTTGGGTTGGGAAAGGTGGTGCTTTCACAGGAGAAATCAGTGTGGAACAATTGAAAGATATTGGCTGCAACTGGGTTATCCTTGGGCACTCTGAGAGGAGACATGTTATTGGTGAAGATGATCAGTTCATAGGAAAGAAAGCTGCTTATGCCTTGAGCCAGGGTCTTAAAGTAATAGCTTGTATTGGAGAACTGTTACAAGAAAGGGAAGCAGGAAAAACTTTTGATGTCTGTTTTCAGCAAATGAAGGCTTTTGCAGATGCTGTACCCAGTTGGGATGATGTAGTTATTGCATATGAGCCGGTTTGGGCTATTGGAACTGGTAAAGTGGCCACACCCCTGCAGGCACAGGAAGTACACATAGCTGTTCGTGATTGGCTTAAAAAGAATGTCTCAGCTGAAGTTGCTTCTAAAACACGAATTATTTATGGAGGTTCAGTGAATGGGAGCAATTGTTCAGAGCTCGCCAAACAAGAGGATATTGATGGATTTCTTGTTGGCGGTGCTTCCTTAAAGGGTCCTGAATTTGCTGTGATTGTCAATTCTGTAACATCCAAGAAAGTTGCTGCTTGA 975 0.4585 MAAVTSTSLASQLSTPKATTPSYSYSSATQFSGLRRSFSNLDHSPQPFFSSNLRISSSPRKPCRGIVAMAGSGKFFVGGNWKCNGTKDSISKLVSDLNSAKLEADVDVVVAPPFVYLDQVKNSLTDRIEISAQNSWVGKGGAFTGEISVEQLKDIGCNWVILGHSERRHVIGEDDQFIGKKAAYALSQGLKVIACIGELLQEREAGKTFDVCFQQMKAFADAVPSWDDVVIAYEPVWAIGTGKVATPLQAQEVHIAVRDWLKKNVSAEVASKTRIIYGGSVNGSNCSELAKQEDIDGFLVGGASLKGPEFAVIVNSVTSKKVAA* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0133 324 ProSitePatterns Triosephosphate isomerase active site. 232 242 IPR020861 GO:0004807
Vvi3g0133 324 Gene3D Aldolase class I 59 323 IPR013785 -
Vvi3g0133 324 SUPERFAMILY Triosephosphate isomerase (TIM) 72 316 IPR035990 GO:0004807
Vvi3g0133 324 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 74 316 IPR000652 GO:0004807
Vvi3g0133 324 Pfam Triosephosphate isomerase 76 316 IPR000652 GO:0004807
Vvi3g0133 324 PANTHER TRIOSEPHOSPHATE ISOMERASE 70 316 IPR000652 GO:0004807
Vvi3g0133 324 CDD TIM 75 315 IPR000652 GO:0004807
Vvi3g0133 324 Hamap Triosephosphate isomerase [tpiA]. 73 316 IPR022896 GO:0004807|GO:0006096
Vvi3g0133 324 NCBIfam triose-phosphate isomerase 76 306 IPR000652 GO:0004807
Vvi3g0133 324 FunFam Triosephosphate isomerase 69 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0133 Vvi-Chr3 1238289 1248488 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0133 K01803 - vvi:100260576 621.698