LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi3g0128	ATGGCGACAGACGCTGTGGTTTCCTTTGCGGTTGAAAGGATCGGTGACATGCTCATTCAAGAAGCAATTTTCTTGAAGGGGGTACGGGGGAAAGTGGAGAGGCTGCAGAAAGATCTAAGGGCGATGAAATGCTTCTTGGAAGAAGCGGAGAAGAAGCAAGAAGAAGATTTAAGAGTGCGCAAGTGGGTTTCCGAAATCCGTGATGTGGTTTATGATGTTGAGGACATCATAGACATGTTCATCCTGAATGCAGAGTCCCTGAGAACAGACTACTTTCTCAAGCGTGTCTTCAAGAAGTTGATAAACCGCCATAAGGTTGGCAAGAAAATTGAAGACATCCAACTGACCCTCCAAGACATCTCAAATAGGCGGGAGGCTCTAGGAATAAAAAATATTGGAGAAGGAACAAGCGGTTCGGGTCAAATGTTGCAGGATCTAAGACGCTCCTCTCCTCGTGCAGAAGAGCGTGTCATCGTGGGCCTTACACAGGAGGCACATAAGCTAGTGGAGCAGCTGATCGGAGGAGGCCAAAGACGCCGCGTGATTTCTTTGGTAGGAATGGGCGGCATAGGCAAAACCACCCTTGCCAAGAAGGTCTATAATCATGAAAAAATTGTGGAACACTTTCCAGAATTTCGTGCCTGGATTTATGTATCCCAAGATTGTAGACCCAGAGAGGTTTATATGCAAATTATTAACCAGGTTTCTGAACCGACTAAAGAGCAAGCAGAAATGATAGAGAAGTATGGTGAGAACGAGTTGGGGGATTTCCTTCATGATCATTTGAAGGAGAAAAAATATTTGATAGTTCTGGATGATGTATGGAGGTGTGCCGATTGGGATTTTCTTGCAAAAGTGAGCAGCAACGATCCTGATTGCCTTGGAAATGTTTTTCCCGATGGGAGTAACGGCAGCAGATTACTTCTTACAACTCGATATAAGGATGTTGCTTTGCATGCAGATGCTCGAACTATTCCCCTTGAAATGCGGCTTCTTTCGAAACAAGAGAGCTGGGACTTGTTTTGTCGGAAGGCGTTCCTTGATGCTGATAGCGAGAGGTATCCTCCAGATTTGAAGGAACTTGGGGAAGAGATGGTGGGCAAATGTAAAGGTTTGCCATTGGCCATCGTTGTATTGGGGGGTTTGCTGTCAAGAAATATGTCACATACAGAATGGAAGCAGGTGCATGATAACATTAGTGCACACCTTGATAAAGAAGGCCAAATGGGAGTAATGACAATGCTAAACCTGAGCTACATCGACTTGCCCCATTACTTGAAACCGTGCTTTCTTCATTTAAGTCTCTTCCCAGAAGATTACGTGATCTCCTCAAGAAAACTGCTCCTTTTATGGACTGCTGAGGGTTTTGTGCGAGAACAAGATGACCGAAGAATGAAAGACATGGCTGAGGTTTACTTGAATGAGTTAATCAATAGAAACTTGATTCAAGTAGTGAGAATGAGTGTTAATGCAAGGGTTATGAAATGTCGAGTTCATGACCTTATACGAGAGTTGGCTATTGAAAAGGCAAAAGAGCAAAACTTCATGGGAACTAGTATTGCAGATCCTCTATCCCCCTCCGCCAATTTATCTCTCTTTTCATCTAAATCCCGTCGACGAAGTATTTATTCTGACTTTGAGAGGTATGCTTCCATTGAACATTTAACCCCATACCTTCGCTCTCTCTTATTTTTCAATTTGGGGAAAAATTGTAGAGCATCACAATTGGATTTCATTGCCAAATGCTTCAGAGTGCTTAGAGTGTTAGATTTGGAAGGTTTAGAAATTGAATGTCTACCCAGTATAATTGGGGAAATGATTCATTTAAGGTACTTGGGATTAAGGCATACTCGTCTAAAAATGCTTCCACCATCTATAGGCAACCTAAGGAGTTTGCAGACTTTGGAGATAAACAATCTTAGACAAGTGCCAAATGTGATATGGAAGATTAAAAACATGAGATATCTTTATATCGAGGGGCAAGAGGAAGATGTTCCACTGCAAATTGATACATTGCAAAATCTTCAAATTCTGTCAGGCACAACCTTCAACCAATGGATCAAGAACGATTCAAGCAACTTAACTTGCCTTGAGAAATTGAAATTAGAAGGAAGGTGTGAGGTAGAAGGGGCTGTGTTTTCAAACTCCATTGCCAAGCTACCTAGTCTTAAATCCTTGTACCTTAAGGCATCAGATGATTCCAGCATTCCACCCTTTGCCATAAACTCTTGCCTCCATCTTTCTAAGTTGGACATAAAGGGACACATGCAAAAATTGCCTGAAACCATTGAATTCTCACCAAATCTTACACAATTGACATTGGAAGCATCTAGGCTAGGTTGTGATCATATGGTCGTTTTAGAGAAGCTGCCAAAATTGTTGACTCTCATATTAAGGGCAAACGCATACCATGGAATTAAAATGCAAGTGTTTGCAAATGGGTTTCCTCAACTCAAAGTACTTCAACTTTCAGAGTTAAAAGGATTGACTGAGTTGAACATAGGGCAAGGCGCAATGCCATGGCTTATGCAATTACAAATTCATAGACGAGTGAATATCGTAGGATTTAATGGGCTTCTAAATCTAGTGGGGCTAAACATTATGGGTGGACTACATCTTGCCATAGATTTGCTCTTGAATCCAAGAAATCGTCATTGGCATGGAACAAGGTACCTACATTCATCTATCTACTTAGATCTCTTGAACTATCAATTTTTACTACTTGTCACTTCTTGA	2736	0.4167	MATDAVVSFAVERIGDMLIQEAIFLKGVRGKVERLQKDLRAMKCFLEEAEKKQEEDLRVRKWVSEIRDVVYDVEDIIDMFILNAESLRTDYFLKRVFKKLINRHKVGKKIEDIQLTLQDISNRREALGIKNIGEGTSGSGQMLQDLRRSSPRAEERVIVGLTQEAHKLVEQLIGGGQRRRVISLVGMGGIGKTTLAKKVYNHEKIVEHFPEFRAWIYVSQDCRPREVYMQIINQVSEPTKEQAEMIEKYGENELGDFLHDHLKEKKYLIVLDDVWRCADWDFLAKVSSNDPDCLGNVFPDGSNGSRLLLTTRYKDVALHADARTIPLEMRLLSKQESWDLFCRKAFLDADSERYPPDLKELGEEMVGKCKGLPLAIVVLGGLLSRNMSHTEWKQVHDNISAHLDKEGQMGVMTMLNLSYIDLPHYLKPCFLHLSLFPEDYVISSRKLLLLWTAEGFVREQDDRRMKDMAEVYLNELINRNLIQVVRMSVNARVMKCRVHDLIRELAIEKAKEQNFMGTSIADPLSPSANLSLFSSKSRRRSIYSDFERYASIEHLTPYLRSLLFFNLGKNCRASQLDFIAKCFRVLRVLDLEGLEIECLPSIIGEMIHLRYLGLRHTRLKMLPPSIGNLRSLQTLEINNLRQVPNVIWKIKNMRYLYIEGQEEDVPLQIDTLQNLQILSGTTFNQWIKNDSSNLTCLEKLKLEGRCEVEGAVFSNSIAKLPSLKSLYLKASDDSSIPPFAINSCLHLSKLDIKGHMQKLPETIEFSPNLTQLTLEASRLGCDHMVVLEKLPKLLTLILRANAYHGIKMQVFANGFPQLKVLQLSELKGLTELNIGQGAMPWLMQLQIHRRVNIVGFNGLLNLVGLNIMGGLHLAIDLLLNPRNRHWHGTRYLHSSIYLDLLNYQFLLLVTS*	912

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi3g0128	911	Pfam	NB-ARC domain	164	419	IPR002182	GO:0043531
	Vvi3g0128	911	PRINTS	Disease resistance protein signature	181	196	-	-
	Vvi3g0128	911	PRINTS	Disease resistance protein signature	369	383	-	-
	Vvi3g0128	911	PRINTS	Disease resistance protein signature	261	275	-	-
	Vvi3g0128	911	PRINTS	Disease resistance protein signature	627	643	-	-
	Vvi3g0128	911	FunFam	Probable disease resistance protein At1g61300	141	323	-	-
	Vvi3g0128	911	Gene3D	-	331	418	IPR042197	-
	Vvi3g0128	911	Gene3D	-	419	510	IPR036388	-
	Vvi3g0128	911	PANTHER	DISEASE RESISTANCE PROTEIN RP	37	847	IPR044974	GO:0006952
	Vvi3g0128	911	FunFam	Probable disease resistance protein At5g66910	331	418	-	-
	Vvi3g0128	911	Coils	Coil	32	52	-	-
	Vvi3g0128	911	CDD	RX-CC_like	4	122	IPR038005	-
	Vvi3g0128	911	Pfam	Rx N-terminal domain	6	88	IPR041118	-
	Vvi3g0128	911	SUPERFAMILY	L domain-like	497	904	-	-
	Vvi3g0128	911	Gene3D	-	6	122	-	-
	Vvi3g0128	911	Gene3D	Ribonuclease Inhibitor	544	871	IPR032675	-
	Vvi3g0128	911	FunFam	Probable disease resistance protein At1g63360	419	508	-	-
	Vvi3g0128	911	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	140	433	IPR027417	-
	Vvi3g0128	911	Gene3D	-	140	327	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi3g0128	Vvi-Chr3	1174406	1177141	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi3g0128	561	813	Receptor kinase-like Gene Family	AT4G36180	25.940	1.40e-09	60.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi3g0128	-		-	vvi:104877365	1728.76