Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0125 ATGGCGACAGAGGCTGTGGTTTCCTTTGCGGTTGAAAGGTTTGGTGACATGCTCATTCAAGAAGCAATTTTCTTGAAGGGGGTACGGGGGAAAGTCGAGAGGCTGAATAAAGATCTAGGGGCCATGAAATGCTTCTTGGAAGAAGCGGAGAAGAAGCAAGAAGAAGATGTAAGAGTGCGCAACTGGGTTTCTGAAATCCGTGATGCGGTTTATGATGTTGAGGACACCATAGACATGTTCATCCTGAATGCAGAATCCCTGAGAACAGACTACTTTCTCAAGGGTGTCTTCAAGAAGTTGATAAACCGCCATAAGGTTGGCAAGAAAATTGAAGACATCCAACTTACCCTCCAGGACATCTCAAATAGGCGGGAGGCTCTCGGAATAAAAAATATTGGAGAAGGAACAAGCGGTTCGGGTCAAATGTTGCGGGATCTAAGACGCTCCTCTCCTCGTGCAGAAGAACTTGTCATCGTGGGCCTTACACAGGAGGCAGATAAGCTAGTGAAGCAGCTCACCGTAGGAGACCAAAGGCGCCGCGTGATTTCTTTGGTAGGAATGGGCGGCATAGGCAAAAGCACCCTTGCCAAGAAGGTCTATAATCATGAACAAATTGTGGAACACTTTCCAGATTGTCGTGCCTGGATTTATGTATCCCAAGATTGTAGACCCAGAGAGGTTTATATGCAAATTATTAACCAGGTTTCTGCACCAACTAAAGAACAAGCAGAAATGATAGAGAAGTATGGAGAGAACGAGTTGGGGGATTTCCTTCATGATCATTTGAAGGAGAAAAGATATTTGATAGTTCTGGATGATGTATGGAGGTGTGCCGATTGGGATTTTATTGCAAAAGTGAGCAGCAACGATCCTGATTGCCTTGGAAATGTTTTTCCCGATGGGAGTAACGGCAGCAGATTACTTCTTACAACTCGATATAAGGATGTTGCTTTGCATGCAGATGCTCGAACTATTCCCCGTGAAATGAGGCTTCTTTCGAAAAAACAGAGATGGGACTTGTTTTGTCGGAAGGCGTTCCTTGATGCTGATAGCGAGAGCTATCCTCCAGATTTGAAGGAACTTGGGGAAGAGATGGTGGACAAATGTAATGGCTTGCCATTGGCCATCGTTGTATTGGGGGGTTTGCTGTCAAGAAATATGTCACATACAGAATGGAAGAAGGTGCACGATAACATTAGTGCATACCTTGCTAAAGAAGGCCAAATGGGAGTAATGGCAATGCTAAACCTGAGCTACATCGACTTGCCCCATTACTTGAAACCGTGCTTTCTTCATTTAAGCCTCTTCCCAGAAGATTATGTGATCTCCTCGAGAAAACTGCTCCTTTTATGGACTGCTGAGGGTTTTGTGCCAGAACAAAATGAACGAAGAATGAAAGACATGGCTGAGGTTTACTTGAATGAGTTAATCAATAGAAATTTGATTCAAGTAGTGAGAATGAGTGTTAATGCAAGGGTTACGAAATGTCGGGTTCATGACCTTGTATGA 1509 0.4407 MATEAVVSFAVERFGDMLIQEAIFLKGVRGKVERLNKDLGAMKCFLEEAEKKQEEDVRVRNWVSEIRDAVYDVEDTIDMFILNAESLRTDYFLKGVFKKLINRHKVGKKIEDIQLTLQDISNRREALGIKNIGEGTSGSGQMLRDLRRSSPRAEELVIVGLTQEADKLVKQLTVGDQRRRVISLVGMGGIGKSTLAKKVYNHEQIVEHFPDCRAWIYVSQDCRPREVYMQIINQVSAPTKEQAEMIEKYGENELGDFLHDHLKEKRYLIVLDDVWRCADWDFIAKVSSNDPDCLGNVFPDGSNGSRLLLTTRYKDVALHADARTIPREMRLLSKKQRWDLFCRKAFLDADSESYPPDLKELGEEMVDKCNGLPLAIVVLGGLLSRNMSHTEWKKVHDNISAYLAKEGQMGVMAMLNLSYIDLPHYLKPCFLHLSLFPEDYVISSRKLLLLWTAEGFVPEQNERRMKDMAEVYLNELINRNLIQVVRMSVNARVTKCRVHDLV* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0125 502 Gene3D - 331 418 IPR042197 -
Vvi3g0125 502 FunFam Probable disease resistance protein At1g61300 141 323 - -
Vvi3g0125 502 Pfam NB-ARC domain 163 419 IPR002182 GO:0043531
Vvi3g0125 502 FunFam Probable disease resistance protein At1g63360 419 502 - -
Vvi3g0125 502 FunFam Probable disease resistance protein At5g66910 331 418 - -
Vvi3g0125 502 Gene3D - 6 114 - -
Vvi3g0125 502 Gene3D - 419 502 IPR036388 -
Vvi3g0125 502 Gene3D - 142 325 IPR027417 -
Vvi3g0125 502 Coils Coil 32 52 - -
Vvi3g0125 502 CDD RX-CC_like 4 122 IPR038005 -
Vvi3g0125 502 PANTHER DISEASE RESISTANCE PROTEIN RP 54 502 IPR044974 GO:0006952
Vvi3g0125 502 PRINTS Disease resistance protein signature 261 275 - -
Vvi3g0125 502 PRINTS Disease resistance protein signature 181 196 - -
Vvi3g0125 502 PRINTS Disease resistance protein signature 369 383 - -
Vvi3g0125 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 433 IPR027417 -
Vvi3g0125 502 Pfam Rx N-terminal domain 6 88 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0125 Vvi-Chr3 1084306 1085814 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0125 - - vvi:100241898 1004.59