Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0123 ATGCTGATGAAGCTCAGGCAATCATCTCCTCGAATAGAGGATCAGGGTATCGTCGGCCTCCAGAATGATACAATTCAGCTAGTGGAGCGGCTGCTGAGAAAGGACCAAAGGCGAACTGTGGTTTCAATTGTGGGAATGGGAGGGATAGGCAAAACTACTCTTGCCAAGAAAGTCTATAACGATAGAAGAGTGGTGAATCATTTTCAGTATTGTCGAGCTTGGGTATATGTGTCTCTAGACTGTAAACCCAGAGACATTTTTCAGAGAATTATAAACCAAATTTCTTTGTCAAGTGAATGTGAGGCGGAGAGGACCGAGAAATTGCAAGAGGATGAGCTGCGGGATTTCCTCCATGACTATCTGAAGGAGAAAAGATACTTCGTAGTTTTTGATGATTTATGGAAGAGTGAAGATTGGAAATATGTTCCAAATGCGTTTCCTAGGGAGAGAAATGGCAGCAGGTTACTTCTCACAACTCGAAATAAGGATGTTGCTCTGCATGCTGATCCCCTAAGTGTTCAGCATACAATTCAACTTCTTTCTGCAAACGAGAGCTGGAGGCTGTTTTGTAGGACTGCATTCCCAGGAGATGACCCTGAGAGTTGTCCTCCAGAGTTAAGTGGATGCTATTCTTCTTGA 639 0.4366 MLMKLRQSSPRIEDQGIVGLQNDTIQLVERLLRKDQRRTVVSIVGMGGIGKTTLAKKVYNDRRVVNHFQYCRAWVYVSLDCKPRDIFQRIINQISLSSECEAERTEKLQEDELRDFLHDYLKEKRYFVVFDDLWKSEDWKYVPNAFPRERNGSRLLLTTRNKDVALHADPLSVQHTIQLLSANESWRLFCRTAFPGDDPESCPPELSGCYSS* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0123 212 PRINTS Disease resistance protein signature 40 55 - -
Vvi3g0123 212 PRINTS Disease resistance protein signature 120 134 - -
Vvi3g0123 212 Gene3D - 3 173 IPR027417 -
Vvi3g0123 212 FunFam Probable disease resistance protein At1g61300 2 170 - -
Vvi3g0123 212 Pfam NB-ARC domain 26 200 IPR002182 GO:0043531
Vvi3g0123 212 PANTHER DISEASE RESISTANCE PROTEIN RP 18 192 IPR044974 GO:0006952
Vvi3g0123 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 205 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0123 Vvi-Chr3 1077896 1078534 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0123 - - vvi:104878768 432.95