Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0116 ATGTCTGAGCTTTCCCCTAAATTGGGTCAGAATGGAACTATAAAAAACATTGATTCTTCAAGTACAGTGGCTGAAACTGAAGACATTGATTTCTCTAAACTTTCTGAAAGGCCAAGGCCTTTGACTATGGAGAGACAGAGATCGTACGATGAAAGGTCATTCTTGAGCGAATTATCTGTTGGAATGTCACCCCGGCTCTCCATCAGAAATATTGATAGTTATTCCCGAAATATAGATCATCTTGATACCGTATTTTCTCCATGTAGACGGTCTGGGTTTAACACACCAAGGTCAGCGATGGACTTTGAGCCGCACCCAATGTTTGCCGAAGCTTGGGAAGGTTTAAGGCGTTCATTGGTTTTTTTCCGTGGTAAACCAGTTGGCACCATTGCTGCTTTAGATAATTCTGACGAAGAACTTAACTATGATCAGGTGTTTGTGAGAGACTTTGTCCCAAGCGCATTGGCTTTTCTGATGAATGGGGAACCTGAAATTGTAAGGAACTTTCTCGTAAAGACTCTTCGCCTTCAATCTTGGGAGAAAAAGGTAGATCGTTTCCAGCTTGGAGAGGGTGTAATGCCAGCCAGTTTTAAAGTACTCCATGATCCAGTCAGGAACTCCGATACTTTAATAGCTGATTTTGGTGAAAGTGCAATAGGAAGAGTGGCTCCTGTTGATTCTGGATTTTGGTGGATTATACTGCTTCGGGCATACACAAAGTCTACAGGAGACTCTACCCTAGCTGAACTGCCTGAATGCCAGAAGGGTATGCGCCTTATTCTGACTTTATGCCTTTCTGAGGGGTTCGACACATTTCCTACTCTTCTCTGTGCTGATGGGTGCTGTATGATTGATCGAAGAATGGGTGTTTACGGGTATCCCATTGAAATACAAGCACTTTTCTTTATGGCGTTAAGATGTGCTTTGCTTTTACTTAAGCAAGATGACCAGGGTAAGGAGTTCATAGAACGGATAGTTAAACGTCTGCATGCCTTAAGCTATCACATGAGGAGTTATTTTTGGCTTGATATGAAGCAACTTAATGATATTTATCGATACAAAACGGAAGAGTACTCTCACACTGCTGTCAACAAGTTCAATGTAATACCTGATTCTATTCCTGAATGGATTTTTGATTTTATGCCAACTTATGGTGGCTACTTCATCGGGAATGTAAGCCCTGCCAGGATGGACTTCCGTTGGTTTTGCTTGGGTAACTGTGTTGCAATCCTCTCATCATTGGCAACCCCTGAACAATCCACTGCAATTATGGATCTTATCGAATCACGTTGGGAGGAATTGGTTGGAGACATGCCATTAAAGGTTTGTTATCCTGCCATAGAAGGCCATGAATGGCGAATTGTAACAGGGTGTGATCCAAAAAATACAAGGTGGAGTTACCACAATGGAGGATCTTGGCCAGTGCTTCTATGGCTCCTCACTGCTGCCTGCATCAAAACTGGACGCCCCCAGATTGCGAGACGGGCCATTGAGCTTGCTGAGAGCAGGTTGGTGAAAGATAGCTGGCCAGAATACTATGATGGAAAGCTCGGTCGATTCATTGGGAAGCAGGCACGAAAATTCCAAACCTGGTCGGTTGCTGGTTACTTGGTGGCCAAAATGATGCTGGAGGACCCTTCCCATCTGGGCATGATCTCACTGGAGGAAGACAAACAGATGAAGCCCCTCATCAAAAGATCAGCCTCATGGACCTTCTGA 1719 0.4404 MSELSPKLGQNGTIKNIDSSSTVAETEDIDFSKLSERPRPLTMERQRSYDERSFLSELSVGMSPRLSIRNIDSYSRNIDHLDTVFSPCRRSGFNTPRSAMDFEPHPMFAEAWEGLRRSLVFFRGKPVGTIAALDNSDEELNYDQVFVRDFVPSALAFLMNGEPEIVRNFLVKTLRLQSWEKKVDRFQLGEGVMPASFKVLHDPVRNSDTLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDSTLAELPECQKGMRLILTLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCALLLLKQDDQGKEFIERIVKRLHALSYHMRSYFWLDMKQLNDIYRYKTEEYSHTAVNKFNVIPDSIPEWIFDFMPTYGGYFIGNVSPARMDFRWFCLGNCVAILSSLATPEQSTAIMDLIESRWEELVGDMPLKVCYPAIEGHEWRIVTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRAIELAESRLVKDSWPEYYDGKLGRFIGKQARKFQTWSVAGYLVAKMMLEDPSHLGMISLEEDKQMKPLIKRSASWTF* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0116 572 Gene3D - 138 540 IPR012341 GO:0005975
Vvi3g0116 572 SUPERFAMILY Six-hairpin glycosidases 121 539 IPR008928 GO:0005975
Vvi3g0116 572 PANTHER - 93 566 IPR024746 GO:0033926
Vvi3g0116 572 MobiDBLite consensus disorder prediction 1 29 - -
Vvi3g0116 572 FunFam probable alkaline/neutral invertase B 136 539 - -
Vvi3g0116 572 MobiDBLite consensus disorder prediction 1 28 - -
Vvi3g0116 572 Pfam Alkaline and neutral invertase 111 546 IPR024746 GO:0033926
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0116 Vvi-Chr3 1015486 1018723 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0116 - - vvi:100253759 1174.46