Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0115 ATGAGGCCTCCACGAAGACCGATCCACACCGTGTCCGCATGGGTTCGGCGGCAACCGCCCAAGGTCAAGGCCTTCCTGGCCGTCGTCTCCGGCATGGCTGCGCTGGCGCTGCTCCGCATCGTCGTTCATGATCACGATAATCTATTTGTCGCAGCTGAGGCCGTTCACTCTATCGGAATCTGTGTTCTCATCTACAAGCTCATGAAGGAGAAAACTTGTGCTGGACTTTCACTCAAATCCCAGGAATTAACAGCTATATTCTTGGCTGTGAGATTGTACTGTAGTTTTGTGATGGAATATGACATACACACTCTACTTGATTCAGCTACATTGGGCACAACCTTGTGGGTTATTTATATGATTCGCTTTAGGTTAAAGTCCAGTTACATGGAGGATAAAGACAACTTTGCAATATATTATGTGGTGGGACCCTGTGCTCTGTTAGCTTTGGTTATTCATCCATCTACATCGCATCATTTTGTGAACAGGATTTTCTGGGCTTTCTGTGTGTATCTGGAGGCTGTTTCTGTCCTACCTCAGTTGCGAGTCATGCAGAACACAAAGATTGTTGAACCATTCACTGCTCATTATGTATTTGCATTGGGTGTTGCGAGGTTCTTGAGCTGTGCCCATTGGGTTCTCCAGGTCTTGGATACCCGTGGACACTTGCTAGTAGCTCTCGGCTATGGATTGTGGCCTTCCATGGTTCTTATTTCAGAAATTGTCCAAACATTCATTTTAGCAGACTTCTGTTACTACTATATCAAAAGTGTTGTTGGAGGACAGCTTGTGCTGCGGCTTCCCTCGGGAGTGGTGTGA 819 0.4664 MRPPRRPIHTVSAWVRRQPPKVKAFLAVVSGMAALALLRIVVHDHDNLFVAAEAVHSIGICVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHTLLDSATLGTTLWVIYMIRFRLKSSYMEDKDNFAIYYVVGPCALLALVIHPSTSHHFVNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYIKSVVGGQLVLRLPSGVV* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0115 272 PRINTS ER lumen protein retaining receptor signature 75 95 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vvi3g0115 272 PRINTS ER lumen protein retaining receptor signature 202 220 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vvi3g0115 272 PRINTS ER lumen protein retaining receptor signature 166 186 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vvi3g0115 272 PRINTS ER lumen protein retaining receptor signature 188 202 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vvi3g0115 272 PRINTS ER lumen protein retaining receptor signature 48 67 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vvi3g0115 272 Pfam ER lumen protein retaining receptor 72 214 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vvi3g0115 272 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 47 270 IPR000133 GO:0006621|GO:0016020|GO:0046923
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0115 Vvi-Chr3 1009993 1014481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0115 5 272 Miscellaneous Gene Families AT4G38790 87.687 2.39e-178 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0115 - - vvi:100265794 547.354