Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0114 ATGGGGAGTGGGACAGTTGAGCAAGTGGGCTCATTGAAGAAGGCTAACCCTGGCAAAGCCACGATTCTGGCTCTGGGCAAGGCCTTCCCTCATCAGCTTGTCATGCAAGAGTTTCTGGTTGATGGGTATTTCAGGAACACAAACTGTGATGATCCAGACCTCAAGGAGAAGCTAGCTAGACTCTGCAAGACAACGACAGTTAAAACAAGGTATGTGGTCATGTCAGAAGAGATCCTAAGGAAGTACCCAGAGCTTGTCATTGAGGGCCAACCGACGGTAAAGCAGCGATTAGATATATGCAACAAGGCTGTCACACAGATGGCAATAGACGCTTCAAAAGCTTGCATCAAGAAATGGGGCAGGTCTGTTTCAGAGATAACTCACTTGGTCTATGTGTCCTCAAGTGAGGCCCGGCTGCCAGGGGGTGACCTCTACCTAGCAAAAGGACTAGGGCTGAGCCCTGAGACTCATCGGGTCCAGCTCTACTTCATGGGCTGCTCAGGAGGTGTGGCTGGCCTCCGTGTTGCAAAAGACATTGCTGAGAACAATCCTGAGAGTCGAGTTCTGCTTGCCACTTCAGAAACTACTATTATTGGGTTCAAACCACCAAGTGCAGACCGTCCATATGATCTAGTAGGGGTTGCACTCTTTGGGGATGGAGCTGGAGCCATGATAATAGGCTCTGACCCAATTCCAAGCACTGAAAGGCCTCTCTTTGAGCTCCACACAGCCATCCAGAATTTCTTGCCAGACACTGAGAAGACCATTGATGGACGACTCACGGAAGAAGGGATTAGCTTCAAGCTAGCAAGGGAACTCCCTCAGATAATTGAAGATCACATCGAGGCATTCTGTGATAAACTGATTCGAAATGTTGGATTTTCTGATGAAGACTACAACAAGATCTTCTGGGCAGTCCATCCAGGCGGGCCTGCAATCTTGAATAGGATGGAAAAGAGGCTTGACTTGCTGCCAGAGAAGCTGAATGCTAGTAGGCGAGCACTGGCAGACTACGGAAATGCTAGCAGCAATACCATTGTGTATGTGCTGGAGTACATGTTAGAAGAGAGCTCAAAGACGAAGAGGCAAGACCAGGGAGATGGTGAGTGGGGATTGATTCTGGCTTTTGGTCCCGGGATTACCTTCGAGGGAATCCTTGCAAGGAACCTCACTGTCTAA 1179 0.4911 MGSGTVEQVGSLKKANPGKATILALGKAFPHQLVMQEFLVDGYFRNTNCDDPDLKEKLARLCKTTTVKTRYVVMSEEILRKYPELVIEGQPTVKQRLDICNKAVTQMAIDASKACIKKWGRSVSEITHLVYVSSSEARLPGGDLYLAKGLGLSPETHRVQLYFMGCSGGVAGLRVAKDIAENNPESRVLLATSETTIIGFKPPSADRPYDLVGVALFGDGAGAMIIGSDPIPSTERPLFELHTAIQNFLPDTEKTIDGRLTEEGISFKLARELPQIIEDHIEAFCDKLIRNVGFSDEDYNKIFWAVHPGGPAILNRMEKRLDLLPEKLNASRRALADYGNASSNTIVYVLEYMLEESSKTKRQDQGDGEWGLILAFGPGITFEGILARNLTV* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0114 392 CDD CHS_like 20 386 - -
Vvi3g0114 392 PIRSF PKS_III 6 392 IPR011141 GO:0009058|GO:0016747
Vvi3g0114 392 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 13 390 IPR011141 GO:0009058|GO:0016747
Vvi3g0114 392 FunFam Chalcone synthase 1 238 391 - -
Vvi3g0114 392 Pfam Chalcone and stilbene synthases, C-terminal domain 240 390 IPR012328 -
Vvi3g0114 392 Pfam Chalcone and stilbene synthases, N-terminal domain 13 230 IPR001099 -
Vvi3g0114 392 Gene3D - 238 389 IPR016039 GO:0016746
Vvi3g0114 392 SUPERFAMILY Thiolase-like 237 388 IPR016039 GO:0016746
Vvi3g0114 392 SUPERFAMILY Thiolase-like 16 234 IPR016039 GO:0016746
Vvi3g0114 392 Gene3D - 2 237 IPR016039 GO:0016746
Vvi3g0114 392 FunFam Chalcone synthase 2 5 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0114 Vvi-Chr3 1006320 1007936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0114 152 390 Miscellaneous Gene Families AT3G52160 28.395 1.41e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0114 - - vvi:100258906 783.097