Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0108 ATGCAAGCTTGGAACAGTCTAAGACCCGCCTTCCCAATTGGAAAATCGAGAAGCAAAATATTGCTTACCACTCGCAACAAGGACGTGGCTACCTATGTAGATCCTAAAGCCCTTATCCATGAAGTTCAGTGTCTAACTGAAGAAATGAGTTGGGAGCTGCTACAGAAGAAAGCAATGTTACCAGGAGGACATGGTATAGACTTCACTTGGGAGAGGTTAGGGATGAAAATGGTCAGACACTGTGGGGGTTTGCCAGTGGCCATAATTGTGCTCGGAGGACTTTTGGCGACAAAACACACATTGAAAGACTGGGAGATGGTATACCGGAATATTAATTCTTATTTAAGAAGGGGTAAAGGCCATGAACAAGAATTTGGAGGAGTATCAGAGGTGCTAGCTTCAAGCTATTATGATCTTCCATACCAACTGAAACCGTGTTTCCTTTATTTGGGTCATTTTCCAGAGGATTTTGAGATACCCACCAAAAAATTGATGCGAATGTGGGTGGCAGAAGGAATAGTGTCATCTGTGCAGGGGGAAACAGCAGAAGATGTCGCAGAACGTTATTTGGATGAGCTTATAGAGAGGTGTATGGTTCAGGTTGGAAGAAGGAACTTTATTGGTAGGGTAAAAACTTGTCGCCTCCATGACCTTATGCGAGACTTATGCTTGTCAAAAGCAAAAGAGGAAAATTTTCTGCAAGCTACTCATCTTAGGCACAAAAATGACCCAGTTGCAGCATCTTCTTCCATGGTGCCCATAGTAACACCAATGGCTAAAATTCGCAGACTCGCCATCTATTTGGATGAAGGTGTCAATAGATGTATCTCCTCAGAATATGAAAAGTCTTCTCATCTCCGCTCTCTTTTATTTTTCTATGCAAAAGAAGTTGGGATGATCAATTGGGAGCAACTAAAGCCAGTGTTCAATAACTTCAAGTTACTTAGAGTCTTGGATCTAGAAGGGTTTAAGATAACAGAACATTTACCCAAAGCAATACGGAAACTTGTTCACTTGAGATACTTAAATCTAAGGAATAGTAAAGTGAGAGTGTTGCCATCATCTATAGGTAATTTGGTGTGCCTGCATAACCTAGATTTATCATTTGACTTACTTGATGGTCTGCAAAGAGGGGAAATTCCAAATGTGATATGGAAGATGGAACAGTTAAGCCATCTGTATCTTCCTAAAAGCTTTACTATAAATGGTGCAGACAAGTTGCGATTGGATAGTTTGAACAACCTAAAGACTCTGAGAAATGTTGATGCAAGAAAATGTTGTATAAAAGATCTGGTCAAATTGACGAATCTCTCTAAATTAGGAATGCATTCTGTGAAAAGCTATGAAGAGTTGAAGGTAATCCTCAAACACCCAAGCCCCATCTTAAACAGCCTTTGGTTATTGTCCTTGCAGATCTGGGGTGAGAGAGTTGAAGAAAAAGATTTAAGACAATTATTTTCAGATTGTCATCACGATTTTTATAGACTATCTCTTGGTGCAGCGCTTAGCAAGTTACCTGAATACAACTCATTTCCTCCTAATCTCATCAAGTTAACATTATGGGGATCTAGACTTGTGGAAGACCCAATGCCAACATTGGGGAAGCTACCACACTTACAATTCCTAAGATTACCACATACATACTTTGGGAAGGAAATCGTTTGCTTGACAGAAAGTTTTCCACGGCTCAAATATTTATTCATTTCTAACTTTCCAAAGCTAGAGAAGTGGAAGATATATGACACAGCCATGCCCAGTCTTTTAGAGTTGCAGATTAGAAGATGTGAACAATTGAAGAAGCTTCCTGATGGATTGAGATTAGTCACCACCCTCCGGGAATTGGAGATCATAGAGATGCCAAATGGATTTCTAAACAGACTGAAAGTTGGAGGAGAGGATTTCTACAAAGTCCAGCAAGTGCATTCCATCAAACTCTGGGCGAGATCATCATGCTTCTAA 1959 0.4022 MQAWNSLRPAFPIGKSRSKILLTTRNKDVATYVDPKALIHEVQCLTEEMSWELLQKKAMLPGGHGIDFTWERLGMKMVRHCGGLPVAIIVLGGLLATKHTLKDWEMVYRNINSYLRRGKGHEQEFGGVSEVLASSYYDLPYQLKPCFLYLGHFPEDFEIPTKKLMRMWVAEGIVSSVQGETAEDVAERYLDELIERCMVQVGRRNFIGRVKTCRLHDLMRDLCLSKAKEENFLQATHLRHKNDPVAASSSMVPIVTPMAKIRRLAIYLDEGVNRCISSEYEKSSHLRSLLFFYAKEVGMINWEQLKPVFNNFKLLRVLDLEGFKITEHLPKAIRKLVHLRYLNLRNSKVRVLPSSIGNLVCLHNLDLSFDLLDGLQRGEIPNVIWKMEQLSHLYLPKSFTINGADKLRLDSLNNLKTLRNVDARKCCIKDLVKLTNLSKLGMHSVKSYEELKVILKHPSPILNSLWLLSLQIWGERVEEKDLRQLFSDCHHDFYRLSLGAALSKLPEYNSFPPNLIKLTLWGSRLVEDPMPTLGKLPHLQFLRLPHTYFGKEIVCLTESFPRLKYLFISNFPKLEKWKIYDTAMPSLLELQIRRCEQLKKLPDGLRLVTTLRELEIIEMPNGFLNRLKVGGEDFYKVQQVHSIKLWARSSCF* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0108 652 FunFam Probable disease resistance protein At5g66910 44 135 - -
Vvi3g0108 652 FunFam Probable disease resistance protein At1g63360 136 225 - -
Vvi3g0108 652 PANTHER DISEASE RESISTANCE PROTEIN RP 10 598 IPR044974 GO:0006952
Vvi3g0108 652 SUPERFAMILY L domain-like 214 621 - -
Vvi3g0108 652 Pfam NB-ARC domain 3 136 IPR002182 GO:0043531
Vvi3g0108 652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 150 IPR027417 -
Vvi3g0108 652 Gene3D Ribonuclease Inhibitor 247 645 IPR032675 -
Vvi3g0108 652 Gene3D - 44 134 IPR042197 -
Vvi3g0108 652 Gene3D - 135 227 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0108 Vvi-Chr3 979763 981975 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0108 304 470 Receptor kinase-like Gene Family AT5G07280 31.034 9.61e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0108 - - vvi:100246924 1323.92