Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0102 ATGGATGTGAACTTCTCCGCAAAATCTCAAGCTCTGACCCTAATCTCATGCACTCCACTCTACTCTTCTCCTTCTCCTTCTTCTTCTTTCTCCACTCTCCGCCGTGAATTTCTCGGTTGCGGCCATAATTTGAGGCCTCCGGGTCTCCGATCTCCCAAGAAATGTAAAAATATACGTTTTCGGATCCAGTCGCCTTCCAGGTTCTACTTCAAGGCTTCCTTGGGCTCGCAGCCGGTTCTCGTCGTTGTTGCTGTGGCGGCTGTTTTTGCTTTCAGTGTTGTGTTTCTCAGCTATTCAAGGCGGAGGAAGAACTCCAGAGAGGTCTCAGGTCCCTCAGGTTTTGCAATATCCCAACTGAGCAGAGATGTTATGAACCAATTTATGGAGAGTGCAATTCTGGGTTTTGGAGATCTTCACAAGGAGACCTCTGAAAAAGAAAGCAGAGCTACAATGGACATAGTGGAAGAAGTCAGCCATGCTTCCAAAGATAAAGAGGCTCCATGGCAAGAAATTGCCTTGATGCAGGAAGAAACTCATGTCACTAATACATCAGAGTCATCTAGGTTGGATGTTCTTTCATCTAATGCTAAAAATTGTGTATCTGTAAGAGAAACTGAAGAGGCAGGCCCATCGATCCTGCCTCCTCTGCTCTCTGAGTCAGGCTTGCTGCAACCTCTAGTGTTTGCAACTGAAATGCCAGAATTGCAATTGGAAGAACGTCAAATGGAAACCGAGTTTGGTTATGACTTGTCCACACCGGTGGTTCAAACCAAGTCCATTGCTGCTTCTGTTCCGGACATCATTGCACTTGAAGGAGTGAATGAACGTAAGAATAGAGGCGGTAGACCTGGTGAAGAGAGTGAAATCATTTCCTTTACTGGCATTTTCAGAGATACCATTAGAGAAGAGCTTTACACATTTTATGAGGCAAAACAGTCAGTGATGAAACCTATGCCAAACTTCAATGGTATAAAAACATTAGCTTCAAATGCCTCCCTTTTGGATGGGAATGGTGTTTCTTTTCAAATGAGGAATGCTACATCAAAGGAAGCAGAATTATCAGCCCAAAACTCACATTCTTCTGCAGACTATGTTGAAGGAAAAATGTCTCTTTCTTGTTATAAAGAAGGTTCTTCTGGTAAAAGGAATGACCTAGTAAAAGGCAAGGGATTTCCCAGAGACAAGAACGGAAGGCTTCCACCTCTGAGCGACCATAGAAATCTGTCCCAGTTCCCTTTGTCTAATGGCATGACTGTCAAAGAAAAATATCATGATTCTGAGAAATTCAGTGCTTACAACCGATTATTAAGTGAAGGGAGGTTATCTGACTGCATACAATTGCTTGAAGATATGGAAAAAATGGGCTTGTTGGATATGGATAAGGTTTATCATGCAAAGTTTTTCAAAATCTGCAGAAGTCAAAAGGCTGTTACAGAAGCTTTTCGTTTTGCCAAGTTGATCCCAACTCCAACGTTGAGTACATTTAATATGCTTATGTCTGTGTGTGCAACTTCTCAAGATTCAGCTGGAGCATTCCAAGTTCTACAACTTGTACGGGAGGCCGGACTGAAAGCTGATTGCAAACTTTATACTACTTTGATATCAACTTGTGCTAAAAGTGGAAAAGTTGATGCAATGTTTGAAGTGTTTCATGAAATGGTTAATGCTGAAGTGGAACCAAATGTTCATACATATGGTGCACTTATTGATGGTTGTGGTAGAGCTGGACAAGTTGCTAAGGCATTTGGTGCTTATGGAATAATGAGGTCCAAGAAAGTGGAGCCAGATCGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAATCAGGAGCTGTGGATCGTGCTTTTGATGTGTTAGCAGAAATGAGGGCCGAGACACAACCAATAGACCCTGATCACATCACTGTTGGTGCATTGATAAAGGCATGCACAAATGCTGGTCAGGTTGATAGGGCACGAGAAGTATACAAGATGATTGATCAATATAACATTAAGGGCACTCCAGAGGTTTACACCATTGCTGTTAGTAGTCACAGCCAGATTGGTGATTGGGAGTTTGCATACAGTGTGTACACTGACATGACGAGGAAAGGCGTGGTTCCTGATGAGATGTTTCTCAGTGCATTGATAGATGTTGCTGGGCATGCTGGAAAGCTGGATGCTGCCTTTGAGGTCATACAAGAAGCCAGGATTCAAGGAATACCTCTTGGAATTGTATCATATAGCTCATTGATGGGGGCTTGTAGCAATGCCAAAAACTGGCAGAAGGCACTGGAGCTGTATGTGGATATTAAGTCCATGAAATTGAATCCAACGGTATCAACTATGAATGCCTTGATTACTGCCTTGTGTGAAGGCGAACAACTGGAGAAGGCTATGGAAGTTCTATCTGACATGAAGAGAGCGGGCTTGTGTCCAAACACTATCACATACTCCATTCTTTTAGTGGCCAGTGAAAAAAAAGATGATATAGATGTAGGCCTCATGATACTTTCTCAGGCGAGAAAAGACAGTGTAGCCCCTAATCTTGTTATGTGCAGATGCCTGGTTGGCATGTGCTTACGAAGATTCGAGAAGGCTTGTGCACTTGGTGAACCTGTTTTGTCTTTCAACTCAGGAAGGCCACAGATTGACAATAAATGGACCTCATCGGCCTTAATGGTCTACCGTGAAACAGTTTCAGCTGGAGTAATACCCACTATGGAACTTCTTTCACAAGTTTTGGGATGCCTGCAGTTTCCCCGTGATGTTTCCTTGAGAAATAGACTCATTGAGAATCTGGGAGTGAGTGCTGATGCTTCAAGACGCTCAAACCTATGTTCATTGATAGATGGATTTGGCGAATATGACTCTCGTGCTTTTTCATTACTTGAGGAAGCTGCTTCACTTGGAGTTGTGTCATGTGTATCCTTCAAGAAAAGTCCTGTCATTGTTGATACAAGGAGATTGCAGATCCGAATTGCTGAGGTGTACCTCTTAACAGTTTTGAAAGGTCTCAAGCATCGACTTGCTGCTGGAGCAAAGTTACCTAGCATGACCATTTTGCTACCTACGGAGACAACACAAGTTCTCGCTCCCAAGGGTGAGAAAGCAATTAACCTTGCAGGAAGGTGA 3117 0.4312 MDVNFSAKSQALTLISCTPLYSSPSPSSSFSTLRREFLGCGHNLRPPGLRSPKKCKNIRFRIQSPSRFYFKASLGSQPVLVVVAVAAVFAFSVVFLSYSRRRKNSREVSGPSGFAISQLSRDVMNQFMESAILGFGDLHKETSEKESRATMDIVEEVSHASKDKEAPWQEIALMQEETHVTNTSESSRLDVLSSNAKNCVSVRETEEAGPSILPPLLSESGLLQPLVFATEMPELQLEERQMETEFGYDLSTPVVQTKSIAASVPDIIALEGVNERKNRGGRPGEESEIISFTGIFRDTIREELYTFYEAKQSVMKPMPNFNGIKTLASNASLLDGNGVSFQMRNATSKEAELSAQNSHSSADYVEGKMSLSCYKEGSSGKRNDLVKGKGFPRDKNGRLPPLSDHRNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHAKFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDIKSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDIDVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSSALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLIDGFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAEVYLLTVLKGLKHRLAAGAKLPSMTILLPTETTQVLAPKGEKAINLAGR* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0102 1038 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 440 571 - -
Vvi3g0102 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Vvi3g0102 1038 Pfam Pentacotripeptide-repeat region of PRORP 569 729 IPR033443 -
Vvi3g0102 1038 Gene3D Tetratricopeptide repeat domain 417 556 IPR011990 GO:0005515
Vvi3g0102 1038 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 4 1038 - -
Vvi3g0102 1038 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 626 717 - -
Vvi3g0102 1038 Pfam PPR repeat 530 555 IPR002885 -
Vvi3g0102 1038 Pfam PPR repeat 740 768 IPR002885 -
Vvi3g0102 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 773 807 IPR002885 -
Vvi3g0102 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 596 630 IPR002885 -
Vvi3g0102 1038 MobiDBLite consensus disorder prediction 380 401 - -
Vvi3g0102 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 668 702 IPR002885 -
Vvi3g0102 1038 Gene3D Tetratricopeptide repeat domain 647 748 IPR011990 GO:0005515
Vvi3g0102 1038 Gene3D Tetratricopeptide repeat domain 557 646 IPR011990 GO:0005515
Vvi3g0102 1038 Gene3D Tetratricopeptide repeat domain 749 866 IPR011990 GO:0005515
Vvi3g0102 1038 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 718 865 - -
Vvi3g0102 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 633 667 IPR002885 -
Vvi3g0102 1038 MobiDBLite consensus disorder prediction 376 411 - -
Vvi3g0102 1038 Pfam PPR repeat family 772 816 IPR002885 -
Vvi3g0102 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 738 772 IPR002885 -
Vvi3g0102 1038 NCBIfam pentatricopeptide repeat 529 562 IPR002885 -
Vvi3g0102 1038 NCBIfam pentatricopeptide repeat 598 625 IPR002885 -
Vvi3g0102 1038 NCBIfam pentatricopeptide repeat 671 704 IPR002885 -
Vvi3g0102 1038 NCBIfam pentatricopeptide repeat 740 773 IPR002885 -
Vvi3g0102 1038 NCBIfam pentatricopeptide repeat 776 809 IPR002885 -
Vvi3g0102 1038 NCBIfam pentatricopeptide repeat 563 596 IPR002885 -
Vvi3g0102 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 561 595 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0102 400 900 Glycosyltransferase AT1G05670 23.892 2.18e-31 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0102 - - vvi:100250266 1987.23