Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0089 ATGGGTTTTCGCTTGCCTGGGATTGTTAATGCTAAGAAAACCCTGCAGCAAGAGCGCAAGGGTGCAGAGGCCAAAAATGTACCAAAAGGCTATTTTGCTGTTTATGTGGGAGAAGTTCAGAAGAAGCGATTTGTAGTTCCAATCTCATACTTGAAGAACCCTTTATTCCAGAACTTGTTGAGTCAGGCTGAAGAAGAGTTCGGGTTTGATCATCCAATGGGCGGTCTCACAATCCCCTGCACAGAAGAAGCCTTTATTAATCTTACTTGCAGTTTGAACTGCTCATGA 288 0.4375 MGFRLPGIVNAKKTLQQERKGAEAKNVPKGYFAVYVGEVQKKRFVVPISYLKNPLFQNLLSQAEEEFGFDHPMGGLTIPCTEEAFINLTCSLNCS* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0089 95 Pfam Auxin responsive protein 18 92 IPR003676 GO:0009733
Vvi3g0089 95 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 13 92 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0089 Vvi-Chr3 888666 888953 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0089 26 85 Calmodulin-binding Proteins AT3G43120 56.667 6.93e-18 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0089 K14488 - vvi:100247037 197.208