Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0085 ATGGCGCCTAGGGTTTCACTCCTGCTCTTCATTCTTTCTTCTCTCCTCCTCCCTTTCCTTTCTCAGGCAACTTCTTCAAGCCCCTCTCGCGTCGGGCCTTTCAGGCATCTGGAGAGCTTTGGGTCTTTCAAGCATCTGGAGGGGTCTAAAAAGGGCGACAAAACGGAAGGCATCCAGATGGTGAAGAAGTACCTTGAACATTACGGCTACTTGAGCTCTACCCATTATTCCCAAATGGATAGTGATGATTTCGATGATACCTTGGAATCTTCCCTCAAAGCCTTTCAGACCTTTTACCATCTCAAGCCCACTGGAAGCTTAGACGCCCCAACAGCCACCCTGATGTCCAAGCCTCGATGCGGGGTCCCGGACCACCCCACAAGCTCAAACAGTATTAACCCCCAGTATACTATCGACCCAGGGAGCGTGAAATGGCCCCGCGATCAGATGCATATCCACTATATCATCTTCCCAGACTCCCACCCAGAGGAGCCAATCACAAGGGGTTTTCAAGCATGGACCACTGTTTCAAACTTCACCTTCGAGAGGGTTCGAGAGGAATCATTTGCTAAAATCCGAGTTTATTTCCAAGTGAGGGATAAGGGAACTGCACCACCCCTTGATGGGCCTGGAGGAATCTTGGCTTACGCCGGTCCATCATTAACTAATGCAACCATCCATTTCGATGGAGAAGAGAATTGGGTGGAAGGTGCAGTTGCTGATTCTTTTGATTTGCAGACTATTGCTACCCACGAAGTAGGTCATCTTCTAGGACTTGGGCACAGTCGAGTGGTGAAAGCCAACATGTATGCTTATACGGGTACTGCAGAGACGAAACCTTTGATTCAGGATGATATCGATGGCATTAGAGCTAAATACAGCACTTGA 888 0.4887 MAPRVSLLLFILSSLLLPFLSQATSSSPSRVGPFRHLESFGSFKHLEGSKKGDKTEGIQMVKKYLEHYGYLSSTHYSQMDSDDFDDTLESSLKAFQTFYHLKPTGSLDAPTATLMSKPRCGVPDHPTSSNSINPQYTIDPGSVKWPRDQMHIHYIIFPDSHPEEPITRGFQAWTTVSNFTFERVREESFAKIRVYFQVRDKGTAPPLDGPGGILAYAGPSLTNATIHFDGEENWVEGAVADSFDLQTIATHEVGHLLGLGHSRVVKANMYAYTGTAETKPLIQDDIDGIRAKYST* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0085 295 Pfam Putative peptidoglycan binding domain 56 115 IPR002477 -
Vvi3g0085 295 Pfam Matrixin 159 293 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vvi3g0085 295 SUPERFAMILY PGBD-like 51 124 IPR036365 -
Vvi3g0085 295 SMART col_5 141 295 IPR006026 GO:0006508|GO:0008237|GO:0008270
Vvi3g0085 295 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 92 292 - -
Vvi3g0085 295 PANTHER MATRIX METALLOPROTEINASE 38 293 - -
Vvi3g0085 295 PRINTS Matrixin signature 166 181 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi3g0085 295 PRINTS Matrixin signature 281 294 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi3g0085 295 PRINTS Matrixin signature 248 273 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi3g0085 295 PRINTS Matrixin signature 115 128 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi3g0085 295 PRINTS Matrixin signature 190 218 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi3g0085 295 Gene3D Collagenase (Catalytic Domain) 48 295 IPR024079 GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0085 Vvi-Chr3 876808 877695 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0085 - - vvi:104878770 593.578