Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0071 ATGGCGCCTAGAGTTTCTCTCCTGCTCTCCTTCATTCTTTCTTCTCTCCTCCTCCCTTTCCTTTCCCAGGCAACTTCCTCAGGCCCCTCACGCGTCGGGCCTTTCGGGCATCTGAAGAGCTTTGGGTCATTTAACCATCTGGAGGGATCCAAAAAGGGAGACAAAAGGGAAGGCATCCAGAAGGTGAAGCAGTACCTTCAACGCTATGGCTACTTGAGCTCCACCCATTATTCCCAGATGGGTAGTGATGATTTCGACGATGCCTTGGAGTCTTCCCTCAAAGCCTTTCAGACCTTCTACCATCTGAACTCCACAGGAACCCTAGACGCCCCAACAGCCACGCTGATGTCCAGGCCAAGATGTGGGTTCCGGGACCACCCCTCAAACTCAAACAGTACTATCAACCCTAATTATTCTTATACATCGCGCATAAAATGGCCCCGTGATCAGATGGATATCCACTACACAGTGTTCCCTGGCTCCCAACCTGAGCAACCAATTAGAAACGGTTTCGACGCATGGGCTGCTGTTTCGAATTTCACCTTCGAAAGGGTTCGAGAGGAATCACGTGCTGTACTCCGAGTTAAGTTTGGCCCCATTGATGGCCCTGGAGGAGCCCTGGGTTCCGCCAGCACATCATTATCATATACGGACGCAACCATCACTTTAGATGACACAGCCTCGTGGACGGTCGGTGCAGTTCCTGGTTCTTACGATCTGGAAAGTGTTGCTACGCATGAAATAGGTCATATTCTAGGACTTGACCACAGCCAATTTGAGGAGGCCCTCATGTACGCATACTTTGGTGATGGAGTGACCAAGAAATTGGCTCAGGATGATATCGAAGGCCTTAGAAGTATGGGCTGTGAAGAGGGGCTTAGGGAGGTGGACATGCAAACCAAAATTAGGCAAGAGTGGGATCTTAAGCTTGGGGTCTTGAGCTGGTCACTGAACCATATCACTGAATTTGAAATTTCTGATTCTATCTCACTTGGGTTTTGCTTTTCATAG 1011 0.4946 MAPRVSLLLSFILSSLLLPFLSQATSSGPSRVGPFGHLKSFGSFNHLEGSKKGDKREGIQKVKQYLQRYGYLSSTHYSQMGSDDFDDALESSLKAFQTFYHLNSTGTLDAPTATLMSRPRCGFRDHPSNSNSTINPNYSYTSRIKWPRDQMDIHYTVFPGSQPEQPIRNGFDAWAAVSNFTFERVREESRAVLRVKFGPIDGPGGALGSASTSLSYTDATITLDDTASWTVGAVPGSYDLESVATHEIGHILGLDHSQFEEALMYAYFGDGVTKKLAQDDIEGLRSMGCEEGLREVDMQTKIRQEWDLKLGVLSWSLNHITEFEISDSISLGFCFS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0071 336 SUPERFAMILY PGBD-like 52 125 IPR036365 -
Vvi3g0071 336 PRINTS Matrixin signature 276 289 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi3g0071 336 PRINTS Matrixin signature 116 129 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi3g0071 336 PRINTS Matrixin signature 167 182 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi3g0071 336 PRINTS Matrixin signature 243 268 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi3g0071 336 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 142 287 - -
Vvi3g0071 336 SMART col_5 142 290 IPR006026 GO:0006508|GO:0008237|GO:0008270
Vvi3g0071 336 Pfam Putative peptidoglycan binding domain 56 116 IPR002477 -
Vvi3g0071 336 Gene3D Collagenase (Catalytic Domain) 49 287 IPR024079 GO:0008237
Vvi3g0071 336 PANTHER MATRIX METALLOPROTEINASE 39 287 - -
Vvi3g0071 336 Pfam Matrixin 158 286 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0071 Vvi-Chr3 796376 798942 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0071 - - vvi:104878775 553.903