Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0069 ATGCACAGCTTGTCGACGAAGAAGCACGGTCCGGATCAACCGGACATAGTTGGGCCCACGCCGAAATCACAGCGGTCGAAAATGGTCAAATCTACGGAAGATGGTGAGAAGAAGAATTTGAATAAAAGGCTCAAAGATGTTGAAATCAGTGTTCCAATAGTGTATGGTAACATCGCATTTTGGCTTGGTAAAAAGGCAAGCGAGTATCAGTCCCATAAGTGGACTGTTTATGTTCGTTCTCCAACAAATGAGGATCTGGGTGTAGTGATAAAGCGTGCCGTGTTTCAATTGCATTCGAGTTTCAATAATCCCACAAGGGTTGTGGAGTCACCACCATTTGAGTTGTCGGAAGCGGGATGGGGTGAATTTGAAATCGCTATTACGCTTTATTTCCAGAGTGATGTTTGTGATAAGCCATTGAACTTATATCATCATTTAAAGTTGTACCCAGAGGATGAATCTGGACCCATGTCGGCAAAGAAACCTGTTGTTGTAGAATCCTATGATGAAATTGTTTTCTCCGAGCCTTCAGAAGGTTTCTTTGCTCGTGTGCAGAATCATCCAGCCGTTATTGTGCCCAGGCTACCTGCTGGTTTTAGTTTACCACCACCTGTACCTCTGGAGGATGTAAATGAAAAGAAGAGGTTTGACTCAAAAGACAATCCTCTAAACCAGTGGTTCAAGAATTTTTCAGAAGCAGATGAACTACTACAACTTGCAGCAGCTCGGCAGCAGGTGCAAGCTCATATCGCTAAACTCAGAAGACAGATAAGTGTAATTGATGGGCAGCATCAACAGTTGAAACCCACATCTGACCAGTGA 822 0.4367 MHSLSTKKHGPDQPDIVGPTPKSQRSKMVKSTEDGEKKNLNKRLKDVEISVPIVYGNIAFWLGKKASEYQSHKWTVYVRSPTNEDLGVVIKRAVFQLHSSFNNPTRVVESPPFELSEAGWGEFEIAITLYFQSDVCDKPLNLYHHLKLYPEDESGPMSAKKPVVVESYDEIVFSEPSEGFFARVQNHPAVIVPRLPAGFSLPPPVPLEDVNEKKRFDSKDNPLNQWFKNFSEADELLQLAAARQQVQAHIAKLRRQISVIDGQHQQLKPTSDQ* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0069 273 Pfam YEATS family 71 150 IPR005033 GO:0006355
Vvi3g0069 273 PANTHER PROTEIN AF-9 HOMOLOG 39 270 IPR005033 GO:0006355
Vvi3g0069 273 MobiDBLite consensus disorder prediction 1 38 - -
Vvi3g0069 273 Coils Coil 236 256 - -
Vvi3g0069 273 Gene3D YEATS domain 44 196 IPR038704 -
Vvi3g0069 273 CDD YEATS_TFIID14_like 49 180 - -
Vvi3g0069 273 ProSiteProfiles YEATS domain profile. 43 187 IPR005033 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0069 Vvi-Chr3 755500 760198 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0069 K11341 - vvi:100247042 553.903