Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0064 ATGCTGCACCTCCCCCTCTACCACCGCCATGCTCCTCTCCCTCATCACCACCGTCGATCGTCTTCCATCACCACCTCCACCACCAAATCATGTCCATTATTCAGGAGAACACTTTCCACAGCCGTGGAAGTCCATGTGGCTGGTCCGCACCAGATTGCCACAGTGAGGTGTATGGCGAACCAGAGAAGAGTGAAAATGGTGGCCAAACAGATAAGGAGAGAGCTCTCCGATATGCTTCTCACCGATAAGGTTTTGCAGTTCGCTGTTCTTCCGGAGGCGGCTCTCGGCGCCGATCGCTATCTCTCCTCTCTCACCACTATCAGCGATGTCGAAGTCTCCGCTGATTTGCAGGTGGTTAAAGTTTATGTATCTGTTTTTGGGGATGAGAAAGGAAAGGAGGTCGCCATTGCTGGTTTGAAGTCAAAGGCTAAATACGTTCGAAGTGAGTTGGGGAGGCGTATGAAGCTGCGGCTAACTCCAGAGATACGCTTCGTAGAGGATGAGTCTCTAGAGCGAGGAAGCAGGGTGATTGCAATATTGGATAGGATAAAGAATGAGAAAAAGATGGCAGGAAGCCAGGATCAACCATCCGAATCATCTGATCTACCTCAAGATGATGACTGGGAGGGTGATGGTGATGACCCTGATGAAAACATTATTTATATAAAATAG 672 0.4926 MLHLPLYHRHAPLPHHHRRSSSITTSTTKSCPLFRRTLSTAVEVHVAGPHQIATVRCMANQRRVKMVAKQIRRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDEKGKEVAIAGLKSKAKYVRSELGRRMKLRLTPEIRFVEDESLERGSRVIAILDRIKNEKKMAGSQDQPSESSDLPQDDDWEGDGDDPDENIIYIK* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0064 223 ProSitePatterns Ribosome-binding factor A signature. 146 167 IPR020053 GO:0006364
Vvi3g0064 223 NCBIfam 30S ribosome-binding factor RbfA 58 185 IPR000238 GO:0006364
Vvi3g0064 223 Hamap Ribosome-binding factor A [rbfA]. 62 180 IPR000238 GO:0006364
Vvi3g0064 223 Gene3D - 58 174 IPR015946 -
Vvi3g0064 223 MobiDBLite consensus disorder prediction 200 215 - -
Vvi3g0064 223 PANTHER RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED 49 223 IPR000238 GO:0006364
Vvi3g0064 223 MobiDBLite consensus disorder prediction 187 223 - -
Vvi3g0064 223 Pfam Ribosome-binding factor A 63 179 IPR000238 GO:0006364
Vvi3g0064 223 SUPERFAMILY Ribosome-binding factor A, RbfA 58 183 IPR023799 -
Vvi3g0064 223 FunFam probable ribosome-binding factor A, chloroplastic 58 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0064 Vvi-Chr3 714867 721459 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0064 K02834 - vvi:100267621 389.808