Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0056 ATGGCGATAACACTCAACAGTGGCTTCAAAATGCCCATACTCGGCCTGGGTGTGTGGCGTATGGACGGCAAAGACATCAGAAATCTCCTCATCAACGCCATCAAGATCGGTTATCGCCACTTCGACTGCGCTGCTGATTACCAGAATGAAGTAGAAGTTGGGGAGGCACTTGCAGAAGCATTTCAGACTGGGCTTGTCAAGAGGGAGGATCTTTTCATTACCACCAAGCTCTGGAATTCAGATCATGGACATGTTATAGAGGCTTGCAAAGCCAGTCTGAAGAAGCTCCAGCTAGATTATCTAGACCTGTTCCTTATTCACTTTCCCATTGCCACCAAACATACTGGTGTGGGCACAACTGGGAGTGCTCTGGACGAGGATGGGGTGTTGGACATCGACACAACCATATCCCTGGAAACTACCTGGCATGCTATGGAAGAATTGGTTTCTATGGGTTTAGTTCGAAGCATTGGGATAAGCAACTACGACATCTTTCTAACCAGGGATTGCTTAGCTTACTCCAAAGTGAAGCCTGCTGTGAATCAGATCGAGACACACCCCTACTTCCAACGCGACTCCCTCGTCAAATTCTGCCAGAAGCATGGAATCTGTGTCACTGCCCATACTCCTCTGGGCGGCTCTGTGTCTAACACAGAATGGTTTGGTTCAGTATCATGTTTGGATGACCCAGCTCTCAAAGATCTGGCTGAGAAATACAAAAAGACTGTACCTCAGGTTGTTCTCCGATGGGGCATCCAGCGGAACACGGTTGTCATCCCAAAAACATCAAAGCTTGAGAGATTGGAAGAAAATTTCAGGGTTTTAGACTTTGAGCTGGCCAAAGAGGACATGGACCTGATTGGAAGCCTGGACCGGAAGCATCGAACCAATCAGCCTGCAAAGTTTTGGGGCATAGATCTGTATGCTTGA 930 0.4785 MAITLNSGFKMPILGLGVWRMDGKDIRNLLINAIKIGYRHFDCAADYQNEVEVGEALAEAFQTGLVKREDLFITTKLWNSDHGHVIEACKASLKKLQLDYLDLFLIHFPIATKHTGVGTTGSALDEDGVLDIDTTISLETTWHAMEELVSMGLVRSIGISNYDIFLTRDCLAYSKVKPAVNQIETHPYFQRDSLVKFCQKHGICVTAHTPLGGSVSNTEWFGSVSCLDDPALKDLAEKYKKTVPQVVLRWGIQRNTVVIPKTSKLERLEENFRVLDFELAKEDMDLIGSLDRKHRTNQPAKFWGIDLYA* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0056 309 PANTHER 2,5-DIKETO-D-GLUCONIC ACID REDUCTASE 3 303 IPR020471 GO:0016491
Vvi3g0056 309 PRINTS Aldo-keto reductase signature 226 250 IPR020471 GO:0016491
Vvi3g0056 309 PRINTS Aldo-keto reductase signature 33 57 IPR020471 GO:0016491
Vvi3g0056 309 PRINTS Aldo-keto reductase signature 91 109 IPR020471 GO:0016491
Vvi3g0056 309 PRINTS Aldo-keto reductase signature 145 162 IPR020471 GO:0016491
Vvi3g0056 309 PRINTS Aldo-keto reductase signature 179 208 IPR020471 GO:0016491
Vvi3g0056 309 PIRSF AKR 1 308 IPR020471 GO:0016491
Vvi3g0056 309 ProSitePatterns Aldo/keto reductase family signature 1. 37 54 IPR018170 GO:0016491
Vvi3g0056 309 CDD AKR_AKR2A1-2 1 308 IPR044485 GO:0047641
Vvi3g0056 309 SUPERFAMILY NAD(P)-linked oxidoreductase 3 299 IPR036812 -
Vvi3g0056 309 Gene3D - 1 306 IPR036812 -
Vvi3g0056 309 Pfam Aldo/keto reductase family 15 290 IPR023210 -
Vvi3g0056 309 FunFam NADP-dependent D-sorbitol-6-phosphate dehydrogenase 1 306 - -
Vvi3g0056 309 ProSitePatterns Aldo/keto reductase family signature 2. 145 162 IPR018170 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0056 Vvi-Chr3 666711 670774 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0056 - - vvi:100243586 630.172