Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0054 ATGCCGGCCCTGGCTTGTTGCGTAGATGCTGCTGTTGCACCTCCCGGCTACGCCTTTGCCGGGGATAGCTCTCTTCCCGCGCCGGTGCCATTCGCCGGCGATCCTCTGGCGACAAACGACGCTGCAGCTCTCCCGACCGGCGAACATTCTCATTGGTCCCCATCCCTCTCGGCGGATTTGTATAGGATCGACGGTTGGGGGGCGCCGTACTTCTCCGTTAACACCTCCGGCAACATTTCTGTTCGTCCGTACGGTAAGAACACCCTTCCTCATCAAGAGATTGATCTGATGAAGATCGTTAAGAAAGTTTCGGATCCGAAATCTGCGGGAGGACTCGGTTTGCAGCTTCCTCTCATCGTTCGATTGCCTGATGTGCTCCAGAATCGTCTGGAGTCTCTGCAGTCTGCGTTCGACTTCGCAATCCAATCTCAAGGCTACGAATCTCACTACCAAGGTGTTTTCCCCGTGAAATGCAATCAGGACCGGTTCATCGTGGAAGATGTCGTGAAGTTCGGGTCGGCTTTCCGGTTTGGCCTCGAAGCTGGTTCCAAACCGGAGCTCCTTCTGGCCATGAGCTGTTTGTGCAAAGGAAACCCTGAAGCTCTTCTGGTCTGCAATGGCTTCAAAGATGCTGACTACATTGCGCTTGCTCTGGTTGCGAGGAAACTTGCTTTGAATACTGTGATCGTCCTTGAGCAAGAGGAAGAGCTTGATCTGGTGATTAATCTAAGCCAGAAGCTTTCCGTGCATCCGGTGATTGGTGTCCGAGCCAAGCTGAGGACTAAGCACGCGGGCCATTTTGGGTCCACGTCTGGCGAGAAAGGGAAGTTTGGGTTGACTACGATACAGATTTTGCGAGTAGTAAGAAAGCTTGAACAAGCAGGAATGCTTGATTCTCTGCAATTACTGCATTTCCACATCGGATCTCAGATTCCTTCTACAGACTTGCTCGCAGATGGGGTCAGTGAAGCTGCTCAGATTTACTGTGAATTGGTCCGTCTCGGTGCCCATATGCGAGTCATTGACATTGGAGGGGGTCTCGGTATTGATTATGATGGATCGAAGTCGAGTGAGTCTGATATTTCTGTTGGTTATGGGCTTGAAGAGTATGCTATGGCAGTAGTTCGAGCTGTCCAGCATGTATGTGATCGCAAGTCAGTGAAACACCCTGTGATTTGCAGTGAAAGTGGCCGGGCTTTAGTCTCTCACCATTCAATTTTGATCTTTGAGGCTGTTTCGGCAAGTGTACATGATTCACCTGCTACTTCACTCAGTTTACAGCGCTTTGTGGAGGGACTTTCTGAGGAAGCCCGTGTTGATTACCAGAATCTGGCTGCTGCTGCAGTTAGTGGCGAGTATGAGACTTGCTTGCGTTTTGCTGATCAATTGAAGCAAAGATGTGTTGATCAATTCAAGGAAGGGTCGTTAGGTATTGAACAGCTTGCTGACGTTGATGGGCTGTGTGACTTGGTTTCCAAGGAGGTTGGTGCCACTGATCCAGTGCGCACTTACCATGTGAATTTATCAGTCTTCACATGTATTCCTGATTTCTGGGGTATTGGGCAGCTGTTCCCTATAGTCCCCATTCACCGACTCGACCAGAGGCCTGGGGCGAGGGGGATTTTATCGGATTTGACCTGTGACAGTGATGGGAAGATTGATAAGTTCATTGGCGGTGAGTCAAGCTTGCCTCTGCATGAACTAGAAGGTTCAGATGTTGTTTTTGGTGGTAGTGGGAAGTACTACTTGGGGATGTTCTTGGGCGGGGCTTACGAGGAGGCGCTCGGTGGTTTGCACAATCTGTTTGGTGGCCCGAGTGTTGTTCGGGTGTTGCAGAGCGATGGACCTCACAGCTTCGCAGTGACGCGTGCCATGCCAGGGCCTTCCTGCGGAGATGTGCTCCGAGTGATGCAGCATGAGCCTGAGCTCATGTTCGAGACGCTTAAGCACCGCGCTGAGGAGTGCGGTCACGAGGATGGTATGACCAATGGTTCTCTTGCTAGTGGACTTGCCCTTTCCTTCCACAAGATGCCCTATCTTGTGGCGGGTTCTTCTTGCTGCATGACTAACAGCGGTTACTATTATGGCAATGAAGACAACTACAATCGTGCTGCTGATTCTGCTGCTGGGGATGATGACCATTGGTCTTACTGCTTTGCTTGA 2163 0.5104 MPALACCVDAAVAPPGYAFAGDSSLPAPVPFAGDPLATNDAAALPTGEHSHWSPSLSADLYRIDGWGAPYFSVNTSGNISVRPYGKNTLPHQEIDLMKIVKKVSDPKSAGGLGLQLPLIVRLPDVLQNRLESLQSAFDFAIQSQGYESHYQGVFPVKCNQDRFIVEDVVKFGSAFRFGLEAGSKPELLLAMSCLCKGNPEALLVCNGFKDADYIALALVARKLALNTVIVLEQEEELDLVINLSQKLSVHPVIGVRAKLRTKHAGHFGSTSGEKGKFGLTTIQILRVVRKLEQAGMLDSLQLLHFHIGSQIPSTDLLADGVSEAAQIYCELVRLGAHMRVIDIGGGLGIDYDGSKSSESDISVGYGLEEYAMAVVRAVQHVCDRKSVKHPVICSESGRALVSHHSILIFEAVSASVHDSPATSLSLQRFVEGLSEEARVDYQNLAAAAVSGEYETCLRFADQLKQRCVDQFKEGSLGIEQLADVDGLCDLVSKEVGATDPVRTYHVNLSVFTCIPDFWGIGQLFPIVPIHRLDQRPGARGILSDLTCDSDGKIDKFIGGESSLPLHELEGSDVVFGGSGKYYLGMFLGGAYEEALGGLHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEECGHEDGMTNGSLASGLALSFHKMPYLVAGSSCCMTNSGYYYGNEDNYNRAADSAAGDDDHWSYCFA* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0054 720 FunFam Biosynthetic arginine decarboxylase 123 404 - -
Vvi3g0054 720 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 335 348 IPR022657 -
Vvi3g0054 720 PRINTS Arginine decarboxylase signature 230 251 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g0054 720 PRINTS Arginine decarboxylase signature 507 528 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g0054 720 PRINTS Arginine decarboxylase signature 382 399 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g0054 720 PRINTS Arginine decarboxylase signature 204 219 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g0054 720 PRINTS Arginine decarboxylase signature 122 137 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g0054 720 PRINTS Arginine decarboxylase signature 146 160 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g0054 720 PRINTS Arginine decarboxylase signature 532 557 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g0054 720 PRINTS Arginine decarboxylase signature 589 610 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g0054 720 PRINTS Arginine decarboxylase signature 254 276 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g0054 720 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 149 402 IPR022644 GO:0003824
Vvi3g0054 720 NCBIfam arginine decarboxylase 52 680 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g0054 720 SUPERFAMILY PLP-binding barrel 123 404 IPR029066 -
Vvi3g0054 720 PIRSF ARGDC 37 680 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g0054 720 Gene3D Alanine racemase 123 404 IPR029066 -
Vvi3g0054 720 Gene3D - 421 500 - -
Vvi3g0054 720 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 178 190 IPR000183 GO:0003824
Vvi3g0054 720 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 589 602 IPR000183 GO:0003824
Vvi3g0054 720 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 392 411 IPR000183 GO:0003824
Vvi3g0054 720 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 154 172 IPR000183 GO:0003824
Vvi3g0054 720 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 297 310 IPR000183 GO:0003824
Vvi3g0054 720 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 154 172 IPR022653 -
Vvi3g0054 720 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 61 611 IPR009006 GO:0003824
Vvi3g0054 720 PANTHER ARGININE DECARBOXYLASE 1 681 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vvi3g0054 720 CDD PLPDE_III_ADC 113 610 IPR002985 GO:0006527|GO:0008295|GO:0008792
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0054 Vvi-Chr3 644718 646880 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0054 K01583 - vvi:100233080 1438.71