Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0053 ATGTATTTTGGTGGATATGGATATCATGGAATGTCATTCGAGCAGAAATATCGATGTTACCCTGCATCTTTTATAGATAAGCCACAGATAGAAAGTGGTGGTAAAATTATAATGCCTCCCTCAGCCCTTGACCGCCTAGCTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTGCTCAGCGGGTCTCCCATTGTGGAGTTCTGGAATTCATAGCTGAAGAGGGCATGATCTATATGCCATATTGGATGATGGAAAACATGCTATTACAAGAGGGAGACACTGTGCAGGTGAAAAATGTGACTCTTCCGAAGGGAACATATGTAAAACTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATCTTGGAGACAACACTAAGGAACTTTTCCTGCTTAACCACTGGAGATAGTATCATGGTGGCATATAATAATAAGAAATATTACATAGATATTGTAGAGACAAAGCCTTCTAATGCTATAAGTATCATTGAGACAGACTGTGAGGTGGATTTTGCACCTCCTCTTGATTTCAAAGAACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGGTAGAAGGTTGGATGGAAAACCTCAGAAGTATGAGCCTCCACCAGTTTCATCCTCGGGGTCCAAAGACAAGCAACCTGTTAACCGTGGTAGTGGGCAGCCTTCTGCAGGGTCTAGTTCACAAAGCTCTTCTCGTCAGTCTCAGGGGAAGCTCGTTTTTGGTTCAAATGTAAATCGATCTCCTAAGGAAACACAAAAGGAAGCTGCAAAAGCCACTAAACAGGAGGAGCCAAAGAAAGAAGAGCCGAAGTTCCAGCCTTTTTCAGGGAAAAAGTACTCTTTGAAGGGATGA 906 0.4305 MYFGGYGYHGMSFEQKYRCYPASFIDKPQIESGGKIIMPPSALDRLASLHIDYPMLFELSNPAAQRVSHCGVLEFIAEEGMIYMPYWMMENMLLQEGDTVQVKNVTLPKGTYVKLQPHTTDFLDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFAPPLDFKEPEKPVAPVPLGKAAAEGRRLDGKPQKYEPPPVSSSGSKDKQPVNRGSGQPSAGSSSQSSSRQSQGKLVFGSNVNRSPKETQKEAAKATKQEEPKKEEPKFQPFSGKKYSLKG* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0053 301 Gene3D - 109 182 - -
Vvi3g0053 301 FunFam Ubiquitin fusion degradation protein 1 homolog 4 108 - -
Vvi3g0053 301 Pfam Ubiquitin fusion degradation protein UFD1 13 184 IPR004854 GO:0006511
Vvi3g0053 301 FunFam ubiquitin fusion degradation protein 1 homolog 109 183 - -
Vvi3g0053 301 MobiDBLite consensus disorder prediction 268 291 - -
Vvi3g0053 301 Gene3D - 6 107 IPR042299 -
Vvi3g0053 301 MobiDBLite consensus disorder prediction 219 267 - -
Vvi3g0053 301 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 10 301 IPR004854 GO:0006511
Vvi3g0053 301 MobiDBLite consensus disorder prediction 204 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0053 Vvi-Chr3 632922 638938 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0053 K14016 - vvi:100258971 548.51