Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0051 ATGGCGATGATGCAGTGGTGCGGCGCAGCGGCGAGGAGGATGATGACGACGATGACGGAGAGATCAACAGTGGCGTCTTCATCATCAGCAGCAATGGGGGTGCCGATTCTGTGCGGAAGAGGGGACAAGAAGACGAAGAAGGGGAAGAGGTTCAAGGGGTCGTACGGGAACGCGAGGCCCAAGAAGGAGAAGAAGATTGAGCGCATCAAGGACAAGGTTGAGGTCCCCAGATCCATTCCTTGGCCTCTCCCTTTTAAGCTCATCTGA 267 0.5581 MAMMQWCGAAARRMMTTMTERSTVASSSSAAMGVPILCGRGDKKTKKGKRFKGSYGNARPKKEKKIERIKDKVEVPRSIPWPLPFKLI* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0051 88 Pfam Ribosomal protein S31e 15 80 IPR030826 GO:0005840
Vvi3g0051 88 NCBIfam 30S ribosomal protein THX 39 62 IPR030826 GO:0005840
Vvi3g0051 88 PANTHER 30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC 2 88 IPR044695 -
Vvi3g0051 88 MobiDBLite consensus disorder prediction 36 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0051 Vvi-Chr3 624059 624325 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0051 K19033 - vvi:100241858 158.303