Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0049 ATGGCTGATGCTATGGGAAGGATTCCTCTTTGGCTAATAGGTACTATAATCGGCATTCTTGCGATCGGTTTAATAGGCATTTTCTTTTATGGTTCATATTCTGGATTGGGTTCATCCCTATAG 123 0.3984 MADAMGRIPLWLIGTIIGILAIGLIGIFFYGSYSGLGSSL* 41
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0049 40 Pfam PsbJ 3 40 IPR002682 GO:0009523|GO:0009539|GO:0015979|GO:0016020
Vvi3g0049 40 Hamap Photosystem II reaction center protein J [psbJ]. 2 40 IPR002682 GO:0009523|GO:0009539|GO:0015979|GO:0016020
Vvi3g0049 40 SUPERFAMILY Photosystem II reaction center protein J, PsbJ 7 40 IPR037267 GO:0015979
Vvi3g0049 40 PANTHER PHOTOSYSTEM II REACTION CENTER PROTEIN J 1 40 IPR002682 GO:0009523|GO:0009539|GO:0015979|GO:0016020
Vvi3g0049 40 Gene3D - 1 40 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0049 - K02711 gmx:3989310 25.0238