Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0048 ATGGGGGCACTAAGTGGGGAGGAGCTGGCACGGTGGGAGAAGATGCAAGCGGCGACTGCTCGTGAGGAGAAGATTCTTGTTCTGGTTAGGCTGAGGCCTTTGAGTGAGAAGGAGATTGCAAGGAATGAAGTTTCAGACTGGGAATGCATCAATGAGAACACTGTCTTGTTCAGGAATAGCCTGCAGGAGAGGTCCATGTTCCCAACTGCATATTCATTTGACAAAGTATTTCGAGGTGACTGCACCACGAGGCAGGTGTATGAGGAAGCAGCCAAGGAAATCGCTCTTTCAGTTGTCAATGGTATTAACTCGAGTATCTTTGCATATGGGCAAACTAGCAGTGGAAAGACATACACCATGATTGGAATAACTGAATACACAGTAGCAGACATATATGATTATATACAAAATCATGAGGAAAGGGCATTTGTTCTTAAGTTCTCTGCAATGGAAATCTACAATGAAGCTGTCAGAGACCTCCTTAGCACAGATAATCTTCCACTTAGGCTCCTAGATGATCCAGAGAGAGGGACTATTGTGGAGAAATTGACTGAGGAAACTCTGAGAGACTGGAGCCATCTAAAGAACCTTCTATCCATTTGTGAAGCTCAAAGACAGATAGGGGAGACTTCCCTGAATGAAACAAGCTCCCGATCTCATCAAATTCTAAGATTGACAATTGAAAGTTCTGCTCGTGAATTCTTAGGCAAAGGCAACTCTACCACCCTTGCAGCCAGTGTGAATTTTGTTGATTTGGCGGGAAGTGAACGGGCATCTCAAGCAATGTCAGCTGGGGCAAGATTGAAAGAAGGTTGCCACATAAATCGCAGTCTATTGACCCTTGGAACGGTCATACGGAAGCTGAGCAAGGGAAGACAAGGACATGTCAATTATAGAGATTCTAAGCTAACACGGATATTGCAACCCAGCTTGGGAGGCAATGCTAGAACTGCCATTATCTGCACTTTGAGCCCTGCACGAAGCCATGTTGAGCAATCTAGAAACACTCTGTTGTTTGCTAGCTGTGCAAAAGAAGTCACTACAAAAGCACAGGTCAATGTGGTCATGTCTGATAAGGCCTTGGTAAAGCATTTACAAAAAGAATTGGCCAGATTGGAGAGTGAATTGAGAAGTCCAGCCCCTGCTTCTTCAACTTGTGATCATACAGCATTACTGAGAAAGAAAGATCTTCAGATTGACAAGATGGAGAAAGAGATAAGAGAGTTGACTAAGCTACGTGACATTGCTGAATCTCGGGTTGAGGATTTGCTACAAATGATTGGAAATGATCAATCTTCAAGTCAATGGACTGGAATTCGTAATGATCCTAAATCACAGGTAGGCATTAAATGGGAAGATGATTGTTCAGTATCAGAGGCTGATCCTGGTTGTCGGGATATAGGTGTCAGAAGCTTCAATACAACTCAGTATTCTGGCAGAGGCAGTGGGAGTAATACTCAGGAAAAATACCATCAGCTTCCACAGTACTCTGAAGGCCATTCTCCATTTGATGGACCTTCTTCACCGATATCAGTTGGAAATGGGTTTGTTAGGCCAGATCCACGTTGTGGTCAGGAGGAAATTGCACTTGAAGCTGGGGAAGATCCTGATGACCTTTACAAGGAAGTTCGATGTATTGAGATAGAAGAGTCCAGCAAGCACAAGAACCTCAAGTCCCTTGATACATCAACTGGTGAAAATGAAGGTATGGCAGTGTCTGGGAATGGAGATGTAACAGATGGGGAAATCATATCAGCCCCAACGAAGGGAGAAAGAGAAGTTAGTCACATCCAAAATGGTTTTACATATGGTGCATTGGAGCAGAAAATCCAGGATGTTCAAAAGACAATTGAATCTCTTGTCAGTCCTTACCCTGATGAACCATCTCCCTGGGCACTGGATGCAGATACACCAAGTTCTAGAAGCTTGACATTGACTAGGAGCTGGAGTTGCAGAGCGAATCTCATGACTGGTTCGTCTTCTCCCTGTGAGAAGGTAGAACAAAGACTGAGTACTCCACCTAGTGGATTTGAGAAAGACTTTCCTGGAAGACCAGAAAGTTTCCGAAGGAGGCATCCTCCATTAAACTATGGTGCCAACATGCCAAGGTTGTCAAGAACTGATTCGCAGTCTTCTTTTGGGAGTGCTTTTGTTGACGAGCTAAAAGCAGAGAAGACTTCTGCAGACGAGGATATTACTAGCATCCAGACTTTTGTTGCAGGTCTGAAAGAAATGGCTAAGCTTCAATATGAGAAGCAACTTGTTGATGGTCAGGTTGAGGAGACGGGGACAAGAGCTGATAAGCTTGAAAAGAATGTAAAAGACGTGGGCTTGGATCCAATGCAGGAAGGAACTCTTCCAGATTGGCCCTTGGAGTTTGAAAGGCAGCAGAGGGAGATAATTGAACTTTGGCAAACTTGCAATGTTTCATTGATCCACAGAACCTATTTCTTCCTGCTCTTCAGAGGTGATCCAATGGATTCCATTTACATGGAGGTAGAGCTTAGGAGACTTTCCTTCCTCAAAGAAACTTTTTCTCAGGGAAACCAGTCTCTGGAAGATGGTCGAACTCTCACACAGGCTTCAAGCATTAGGGCTCTTCGCCGTGAGAGGGAGACGCTGAGCAAGCTGATGCACAAAAGATTCTCAGAAGGGGAGAGAAATAGACTTTTCCAGAAGTGGGGTATCAAGTTGGACTCGAAGCGGAGGCGGCTGCAGCTGGCCCAGCGCCTGTGGAGCAACACGACAGATATGAGCCACGTCAATGAGAGTGCTGCCATTGTTGCAAAGCTGATCAAGTTTGTTGAGCAAGGACAGGCCCTCAAGGAGATGTTCGGGCTGAGCTTCACACCTCATCGCACCAGGAGAAGATCATATGGCTGGAAACACAGCATGGGGTCCCTTTTGTGA 2910 0.4515 MGALSGEELARWEKMQAATAREEKILVLVRLRPLSEKEIARNEVSDWECINENTVLFRNSLQERSMFPTAYSFDKVFRGDCTTRQVYEEAAKEIALSVVNGINSSIFAYGQTSSGKTYTMIGITEYTVADIYDYIQNHEERAFVLKFSAMEIYNEAVRDLLSTDNLPLRLLDDPERGTIVEKLTEETLRDWSHLKNLLSICEAQRQIGETSLNETSSRSHQILRLTIESSAREFLGKGNSTTLAASVNFVDLAGSERASQAMSAGARLKEGCHINRSLLTLGTVIRKLSKGRQGHVNYRDSKLTRILQPSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPASSTCDHTALLRKKDLQIDKMEKEIRELTKLRDIAESRVEDLLQMIGNDQSSSQWTGIRNDPKSQVGIKWEDDCSVSEADPGCRDIGVRSFNTTQYSGRGSGSNTQEKYHQLPQYSEGHSPFDGPSSPISVGNGFVRPDPRCGQEEIALEAGEDPDDLYKEVRCIEIEESSKHKNLKSLDTSTGENEGMAVSGNGDVTDGEIISAPTKGEREVSHIQNGFTYGALEQKIQDVQKTIESLVSPYPDEPSPWALDADTPSSRSLTLTRSWSCRANLMTGSSSPCEKVEQRLSTPPSGFEKDFPGRPESFRRRHPPLNYGANMPRLSRTDSQSSFGSAFVDELKAEKTSADEDITSIQTFVAGLKEMAKLQYEKQLVDGQVEETGTRADKLEKNVKDVGLDPMQEGTLPDWPLEFERQQREIIELWQTCNVSLIHRTYFFLLFRGDPMDSIYMEVELRRLSFLKETFSQGNQSLEDGRTLTQASSIRALRRERETLSKLMHKRFSEGERNRLFQKWGIKLDSKRRRLQLAQRLWSNTTDMSHVNESAAIVAKLIKFVEQGQALKEMFGLSFTPHRTRRRSYGWKHSMGSLL* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0048 969 ProSiteProfiles Kinesin motor domain profile. 24 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g0048 969 Coils Coil 355 375 - -
Vvi3g0048 969 SMART kinesin_4 22 354 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g0048 969 Gene3D Kinesin motor domain 15 376 IPR036961 -
Vvi3g0048 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 377 IPR027417 -
Vvi3g0048 969 CDD KISc_CENP_E 24 346 - -
Vvi3g0048 969 Coils Coil 392 426 - -
Vvi3g0048 969 FunFam Kinesin-like protein 18 377 - -
Vvi3g0048 969 MobiDBLite consensus disorder prediction 469 488 - -
Vvi3g0048 969 MobiDBLite consensus disorder prediction 657 710 - -
Vvi3g0048 969 ProSitePatterns Kinesin motor domain signature. 245 256 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi3g0048 969 MobiDBLite consensus disorder prediction 558 580 - -
Vvi3g0048 969 Pfam Kinesin motor domain 30 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g0048 969 MobiDBLite consensus disorder prediction 468 488 - -
Vvi3g0048 969 PANTHER CENTROMERE PROTEIN E 22 956 IPR027640 GO:0003777|GO:0007018
Vvi3g0048 969 Pfam Domain of unknown function (DUF3490) 792 951 IPR021881 -
Vvi3g0048 969 PRINTS Kinesin heavy chain signature 246 264 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g0048 969 PRINTS Kinesin heavy chain signature 210 227 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g0048 969 PRINTS Kinesin heavy chain signature 296 317 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g0048 969 PRINTS Kinesin heavy chain signature 101 122 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0048 Vvi-Chr3 607518 613614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0048 22 444 Miscellaneous Gene Families AT5G06670 39.443 1.41e-81 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0048 K11498 - vvi:100250389 1916.35