Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0046 ATGGCATCAGCAGCTCCATCTCTCCTCAAGTCATCACCAGTCCTAGACAAGTCTGATTGGGTGAAGGGCCAGACTCTTCGCCAGAGCTCTGTGTCCGTCATCCGGTGCCTCCCAACAGCCCCATCAGGGCTCACAATCCGGGCTGGTTCCTATGCAGATGAGCTTGTCAAGACTGCGAAAACAATTGCATCACCCGGACGGGGAATTCTCGCCATGGATGAGTCCAACGCCACCTGTGGGAAGCGTCTGGCATCGATTGGGCTAGAGAACACTGAGGCCAACAGGCAGGCATACAGAACTCTCCTAGTGACAGTCCCAGGGCTAGGCAACCACATCTCTGGAGCCATTCTCTTTGAGGAGACTCTCTACCAATCCACCACTGATGGGAAGAAGATGGTTGATGTGCTTGTTGAGCAGAAAATAGTCCCTGGTATTAAAGTTGACAAGGGTCTTGTGCCCCTGGTTGGCTCCAATGATGAGTCCTGGTGCCAAGGTCTTGATGGCCTTGCCTCCCGCTCTGCTGCTTACTACCAGCAGGGTGCTCGTTTCGCCAAATGGCGTACTGTTGTGAGCATTCCCAATGGCCCATCTGCCCTGGCACTGAAGGAAGCAGCTTGGGGACTTGCTCGCTATGCTGCCATTTCTCAGGACAACGGGCTGGTGCCAATTGTTGAGCCAGAGATCTTGCTCGATGGAGAGCATGGAATTGAGAGGACTTTTGAGGTGGCTCAGAAGGTGTGGGCTGAGGTTTTCTTCTACCTAGCTGAGAACAATGTGATGTTTGAGGGTATCCTTCTCAAGCCTAGCATGGTCACTCCTGGAGCAGAATGCAAGGACAGGGCGACCCCAGAACAGGTCGCAGACTACACCCTCAAGCTCCTCAAAAGGAGAATTCCTCCGGCAGTTCCAGGGATCATGTTCTTGTCTGGTGGGCAGTCTGAAGTTGAAGCCACCCTGAACCTGAACGCAATGAACCAAGGCCCCAACCCATGGCACGTGTCATTCTCGTATGCCAGGGCCCTCCAGAACACTTGCCTAAAGACATGGGGAGGAAGGCCTGAGAGCGTGAAGGAGGCTCAAGAGGCTTTGCTGATCCGTGCCAAGGCCAACTCTCTTGCTCAGCTCGGGAAGTACACTGGCGAAGGAGAGTCAGAGGAGGCAAAGAAGGGAATGTTCGTCAAGGGCTACGTCTACTAA 1197 0.5397 MASAAPSLLKSSPVLDKSDWVKGQTLRQSSVSVIRCLPTAPSGLTIRAGSYADELVKTAKTIASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTVPGLGNHISGAILFEETLYQSTTDGKKMVDVLVEQKIVPGIKVDKGLVPLVGSNDESWCQGLDGLASRSAAYYQQGARFAKWRTVVSIPNGPSALALKEAAWGLARYAAISQDNGLVPIVEPEILLDGEHGIERTFEVAQKVWAEVFFYLAENNVMFEGILLKPSMVTPGAECKDRATPEQVADYTLKLLKRRIPPAVPGIMFLSGGQSEVEATLNLNAMNQGPNPWHVSFSYARALQNTCLKTWGGRPESVKEAQEALLIRAKANSLAQLGKYTGEGESEEAKKGMFVKGYVY* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0046 398 SUPERFAMILY Aldolase 45 398 - -
Vvi3g0046 398 ProSitePatterns Fructose-bisphosphate aldolase class-I active site. 259 269 IPR029768 -
Vvi3g0046 398 Gene3D Aldolase class I 34 397 IPR013785 -
Vvi3g0046 398 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 49 398 IPR000741 GO:0004332|GO:0006096
Vvi3g0046 398 Pfam Fructose-bisphosphate aldolase class-I 54 398 IPR000741 GO:0004332|GO:0006096
Vvi3g0046 398 FunFam Fructose-bisphosphate aldolase 37 397 - -
Vvi3g0046 398 CDD FBP_aldolase_I_a 52 378 - -
Vvi3g0046 398 NCBIfam fructose-bisphosphate aldolase class I 54 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0046 Vvi-Chr3 592606 594260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0046 51 398 Miscellaneous Gene Families AT3G52930 55.114 2.76e-132 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0046 K01623 - vvi:100262354 784.637