Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0042 ATGCCGATTCCTCGAACCGTATTTCTCATCTCCCTCCTCCTCCTTATTCTTCGATTGCCTCGATTTGAATCCGCAAACCACGATTACTCTGATGCATTATCGAAATGCATATTGTTTTTCGAAGGTCAGAGGTCTGGATTTTTACCTAATGGCCAGAGGATCTCTTGGCGCGCAAATTCGGGGCTCTCCGACGGCTGGCAACGGAGCGTCGACCTCACCGGCGGCTACTACGACGCTGGAGACAACATCAAGTTCGGGTTTCCGATGGCGTTCACGACCACAATGCTGGCGTGGAGTGTGATCGAGTTTGGGGATTCGATGCCGGCCGGAGAGCTGAGGAATACGATGGTGGCGATACGGTGGGCGACGGATTATCTTCTGAAGACGGTGTCTCAGCCCGGCCGGATTTTTGTTCAGGTTGGGGACCCCATAATTGACCACAACTGTTGGGAAAGGCCAGAAGATATGGACACTGCCAGGACGGTCTACGCCGTTGAGGCCCCAAACCCGGCTTCCGACGTCGCCGGCGAGACCGCGGCTGCTTTCGCTGCTTCATCCATGGCGTTCCGGTCATCTGACCCGGGTTACTCCGAGACATTGTTGCGAAATGCCATCAGTGTTTTCCAGTATGCTGATAATTATAGAGGAGCTTACAGCGATAATGCGGATATTAGAGATGGTGTATGCCCGTTTTATTGCGATTTCGATGGATATCAGGATGAGCTGCTGTGGGGAGCAGCATGGCTGAGGAGGGCCTCCCAGGATGATTCTTATCTGAATTATATAGAAAACAATGGCAAAACGCTTGGAGCAGAGGACAATATCAACGAATTCGGTTGGGACAACAAGCATGCTGGCCTCAACGTTTTGGTCTCAAAGGAGTTCCTAGAAGGAAGTATGTACTCGCTCCAATCATATAAGGCATCGGCAGATAGCTTCATGTGTACATTAATCCCAGAGTCATCATCCTCCCACATTGAGTACAGTCCAGGAGGGCTCATCTACAAGCCCGGAGGCAGCAACTTGCAGCATGCCACATCCATCGCATTCCTCCTCCTCAGCTACGCTAATTACCTAGCTCGATCGGGGCAGTCCGTCAATTGTGGGAACATTAGCATTGGCCCCTCCTCCCTCCGCCAACAAGCTAAGAGACAAATCGATTACATTTTGGGCGATAATCCAATGGGCATGTCCTATATGGTTGGTTATAGTAATTACTTTCCTCAAAGGATACATCACAGAGGCTCATCCTTGCCTTCAATCAAGGACCACCCTGAATTCATTGCTTGCAAGGAAGGGTCAGCCTATTTCAACTCATCAAATCCTAATCCTAACATTTTGGTGGGCGCTGTGGTGGGTGGCCCTGGTGATGATGATTCGTATGAGGATGATCGAGATGATTTTCGAAAATCAGAGCCAACAACATACATCAATGCACCATTGGTGGGTGCACTTGCGTACTTTGTGGCCAATCCAAACCCAAGTTAG 1488 0.5007 MPIPRTVFLISLLLLILRLPRFESANHDYSDALSKCILFFEGQRSGFLPNGQRISWRANSGLSDGWQRSVDLTGGYYDAGDNIKFGFPMAFTTTMLAWSVIEFGDSMPAGELRNTMVAIRWATDYLLKTVSQPGRIFVQVGDPIIDHNCWERPEDMDTARTVYAVEAPNPASDVAGETAAAFAASSMAFRSSDPGYSETLLRNAISVFQYADNYRGAYSDNADIRDGVCPFYCDFDGYQDELLWGAAWLRRASQDDSYLNYIENNGKTLGAEDNINEFGWDNKHAGLNVLVSKEFLEGSMYSLQSYKASADSFMCTLIPESSSSHIEYSPGGLIYKPGGSNLQHATSIAFLLLSYANYLARSGQSVNCGNISIGPSSLRQQAKRQIDYILGDNPMGMSYMVGYSNYFPQRIHHRGSSLPSIKDHPEFIACKEGSAYFNSSNPNPNILVGAVVGGPGDDDSYEDDRDDFRKSEPTTYINAPLVGALAYFVANPNPS* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0042 495 Gene3D - 25 492 IPR012341 GO:0005975
Vvi3g0042 495 Pfam Glycosyl hydrolase family 9 29 485 IPR001701 GO:0004553|GO:0005975
Vvi3g0042 495 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 388 414 IPR018221 -
Vvi3g0042 495 FunFam Endoglucanase 25 493 - -
Vvi3g0042 495 SUPERFAMILY Six-hairpin glycosidases 8 490 IPR008928 GO:0005975
Vvi3g0042 495 PANTHER ENDO-1,4-BETA-GLUCANASE 9 489 - -
Vvi3g0042 495 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 461 479 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0042 Vvi-Chr3 565597 568081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0042 7 491 Glycoside Hydrolase AT1G70710 61.856 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0042 K01179 - vvi:100260645 978.393