Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0041 ATGAGCTCAGGAAGCCAGAGCAGGAGTAGGAGCCCGCAGGATCGCAAGATCCGCACTGATCGCTTGTCCTATCGTAATGCACCTTATAGGAGAGATTCCCGTCGGGGCTTCAGCCAAGGCAATCTGTGCAAGAACTGCAAGCGACCAGGTCATTATGCTAGAGAATGCCCTAATGTGGCAGTTTGTCATAATTGTAGCCTTCCAGGGCACATTGCATCAGAATGCACCACGAGATCACTATGTTGGAACTGTCAAGAACCAGGCCATACAGCTAGCAATTGTCCAAACGAGGGCATCTGCCACACCTGTGGTAAGACTGGACACCTCGCTAGAGACTGCTCAGCTCCCCCAGTTCCCCCCGGGGACCTGAGGCTGTGCAATAACTGCTACAAGCAAGGCCATATTGCTGCTGACTGCACAAATGACAAGGCTTGCAACAACTGTAGGAAAACAGGTCACCTGGCACGCGATTGTCGCAATGATCCTGTATGCAACCTCTGCAATGTTTCTGGGCATGTGGCTAGACAGTGTCCCAAGGCTAACGTTCTGGGAGACAGGGGTGGTGGGCCTCGCAGCAGTGGGTTCCGAGACATTGTATGTAGGAACTGCCAGCAGCTGGGTCATATGAGCAGGGATTGCGCGGCCCCCTTGATGATCTGTCGCAACTGTGGAGGTCGAGGTCACATGGCATTTGAGTGTCCTTCTGGGAGGTTTATGGACCGCTTTCCCAGGAGGTACTGA 741 0.5344 MSSGSQSRSRSPQDRKIRTDRLSYRNAPYRRDSRRGFSQGNLCKNCKRPGHYARECPNVAVCHNCSLPGHIASECTTRSLCWNCQEPGHTASNCPNEGICHTCGKTGHLARDCSAPPVPPGDLRLCNNCYKQGHIAADCTNDKACNNCRKTGHLARDCRNDPVCNLCNVSGHVARQCPKANVLGDRGGGPRSSGFRDIVCRNCQQLGHMSRDCAAPLMICRNCGGRGHMAFECPSGRFMDRFPRRY* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0041 246 ProSiteProfiles Zinc finger CCHC-type profile. 62 75 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 SMART c2hcfinal6 144 160 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 SMART c2hcfinal6 42 58 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 SMART c2hcfinal6 125 141 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 SMART c2hcfinal6 199 215 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 SMART c2hcfinal6 219 235 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 SMART c2hcfinal6 80 96 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 SMART c2hcfinal6 61 77 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 SMART c2hcfinal6 99 115 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 SMART c2hcfinal6 163 179 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 Gene3D - 193 237 - -
Vvi3g0041 246 ProSiteProfiles Zinc finger CCHC-type profile. 164 179 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 ProSiteProfiles Zinc finger CCHC-type profile. 126 141 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 Pfam Zinc knuckle 81 96 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 Pfam Zinc knuckle 42 58 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 Pfam Zinc knuckle 199 213 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 Pfam Zinc knuckle 99 114 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 Pfam Zinc knuckle 163 179 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 Pfam Zinc knuckle 219 235 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 Pfam Zinc knuckle 125 141 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 Pfam Zinc knuckle 61 76 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 Pfam Zinc knuckle 144 159 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 Gene3D - 21 80 - -
Vvi3g0041 246 ProSiteProfiles Zinc finger CCHC-type profile. 100 113 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 ProSiteProfiles Zinc finger CCHC-type profile. 200 213 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 PANTHER - 5 241 - -
Vvi3g0041 246 SUPERFAMILY Retrovirus zinc finger-like domains 191 237 IPR036875 GO:0003676|GO:0008270
Vvi3g0041 246 MobiDBLite consensus disorder prediction 1 33 - -
Vvi3g0041 246 SUPERFAMILY Retrovirus zinc finger-like domains 120 161 IPR036875 GO:0003676|GO:0008270
Vvi3g0041 246 MobiDBLite consensus disorder prediction 11 32 - -
Vvi3g0041 246 ProSiteProfiles Zinc finger CCHC-type profile. 81 96 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 ProSiteProfiles Zinc finger CCHC-type profile. 43 58 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 Gene3D - 143 192 - -
Vvi3g0041 246 Gene3D - 96 142 - -
Vvi3g0041 246 ProSiteProfiles Zinc finger CCHC-type profile. 220 235 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 SUPERFAMILY Retrovirus zinc finger-like domains 79 116 IPR036875 GO:0003676|GO:0008270
Vvi3g0041 246 ProSiteProfiles Zinc finger CCHC-type profile. 145 160 IPR001878 GO:0003676|GO:0008270
Vvi3g0041 246 SUPERFAMILY Retrovirus zinc finger-like domains 34 78 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0041 Vvi-Chr3 547679 557859 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0041 K09250 - vvi:100250334 544.273